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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0528500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0185) R2 : 5.63e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00625 (0.039) R2dN8 : 7.27e-05 R2N8 : 5.63e-05
σ : 0.349
deviance : 55.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.38 0.337 3.31 0.197 0.197 -0.124 -0.114 -1.24 -0.0138 6.91 80.69 6057 -- --
53.36 0.34 3.3 0.0545 0.194 -0.153 -0.2 -- -0.0632 6.67 85 7250 -- --
51.4 0.334 3.31 0.196 0.201 -0.119 -- -1.26 -0.0128 6.97 81.06 6122 -- --
53.43 0.34 3.3 0.0587 0.196 -0.161 -- -- -0.0754 7 85 7250 -- --
53.4 0.34 3.31 0.204 -- -0.105 -- -1.25 -0.0016 -- 80.96 5928 -- --
53.88 0.344 3.29 0.0346 0.194 -- -0.184 -- -0.00651 6.82 -- -- -- --
53.96 0.344 3.29 0.0317 0.193 -- -- -- -0.00585 7.01 -- -- -- --
55.4 0.347 3.31 0.0655 -- -0.167 -- -- -0.0762 -- 84.95 7176 -- --
53.51 0.341 3.3 -- 0.195 -0.158 -- -- -0.0765 6.96 84.93 6966 -- --
55.93 0.349 3.29 0.0356 -- -- -- -- -0.0023 -- -- -- -- --
53.99 0.344 3.29 -- 0.194 -- -- -- -0.00939 7 -- -- -- --
55.5 0.347 3.31 -- -- -0.156 -- -- -0.0746 -- 84.58 6985 -- --
55.96 0.349 3.29 -- -- -- -- -- -0.00625 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.72 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 45.77 atmosphere 1005.0 90 > th dose dependent rect. 2 1
3 45.94 radiation 1.0 43200 < th dose dependent rect. 3 1
13 46.39 temperature 25.0 90 > th dose independent rect. 1 1
19 46.41 wind 9.0 1440 < th dose independent rect. 3 1
20 46.41 temperature 10.0 1440 > th dose independent rect. 3 1
23 46.41 temperature 30.0 1440 < th dose independent rect. 3 1
27 46.41 humidity 50.0 1440 > th dose independent rect. 3 1
36 46.41 atmosphere 995.0 1440 > th dose independent rect. 3 1
37 46.41 radiation 1.0 1440 < th dose independent rect. 3 1
57 46.41 temperature 10.0 1440 > th dose independent rect. 4 23
69 46.47 temperature 25.0 90 > th dose dependent rect. 1 2
76 46.58 atmosphere 1005.0 30 > th dose independent rect. 2 1
78 46.59 wind 3.0 30 < th dose independent rect. 2 1
79 46.59 wind 3.0 30 < th dose dependent rect. 2 1
89 46.63 humidity 90.0 30 > th dose independent rect. 2 1
90 46.63 humidity 70.0 30 > th dose dependent rect. 2 1
92 46.64 temperature 10.0 30 > th dose independent rect. 2 1
94 46.64 temperature 30.0 30 < th dose independent rect. 2 1
95 46.64 humidity 50.0 30 > th dose independent rect. 2 1
100 46.64 atmosphere 1010.0 30 < th dose independent rect. 2 1
102 46.64 radiation 1.0 30 < th dose independent rect. 2 1
107 46.64 precipitation 0.1 30 < th dose independent rect. 2 1
108 46.64 temperature 10.0 30 > th dose independent rect. 3 23
109 46.64 humidity 50.0 30 > th dose dependent rect. 2 1
112 46.64 radiation 1.0 30 < th dose dependent rect. 2 1
117 46.64 precipitation 0.1 30 < th dose dependent rect. 2 1
122 46.72 atmosphere 1015.0 30 < th dose dependent rect. 2 1
125 46.80 temperature 30.0 30 < th dose dependent rect. 2 1
126 46.81 wind 1.0 30 > th dose independent rect. 2 1
136 46.92 precipitation 0.1 30 < th dose independent rect. 3 23
138 46.92 precipitation 0.1 30 < th dose dependent rect. 3 23
177 47.13 wind 9.0 30 < th dose independent rect. 3 23
188 47.72 humidity 50.0 30 > th dose independent rect. 3 23
212 49.01 humidity 90.0 90 < th dose independent rect. 2 1
254 49.83 humidity 80.0 10 < th dose independent rect. 7 1
258 49.88 temperature 10.0 30 > th dose dependent rect. 3 23
263 49.99 radiation 10.0 30 > th dose independent rect. 7 1
274 50.15 atmosphere 995.0 720 > th dose independent rect. 23 16
275 50.16 humidity 80.0 10 < th dose independent rect. 23 9
292 50.26 temperature 30.0 30 < th dose independent rect. 3 23
309 50.56 wind 7.0 720 < th dose dependent rect. 2 1
314 50.58 atmosphere 1015.0 30 < th dose independent rect. 3 23
316 50.59 wind 1.0 10 > th dose independent rect. 8 23
331 50.60 radiation 10.0 30 < th dose independent rect. 3 23
334 50.62 atmosphere 1015.0 720 < th dose independent rect. 3 8
341 50.69 temperature 10.0 720 > th dose independent rect. 15 8
342 50.69 temperature 10.0 720 > th dose independent rect. 23 16
343 50.70 wind 9.0 720 < th dose independent rect. 3 8
344 50.72 wind 1.0 10 < th dose independent rect. 12 15
362 50.76 radiation 10.0 30 < th dose dependent rect. 3 23
368 50.78 temperature 10.0 720 > th dose independent rect. 3 8
369 50.78 atmosphere 995.0 720 > th dose independent rect. 3 8
372 50.78 temperature 10.0 720 > th dose independent rect. 11 16
378 50.80 humidity 50.0 720 > th dose independent rect. 3 8
382 50.81 precipitation 0.1 720 < th dose independent rect. 23 16
385 50.81 precipitation 0.1 720 < th dose dependent rect. 23 16
406 50.94 radiation 10.0 10 > th dose independent rect. 16 16
408 50.97 humidity 80.0 14400 < th dose dependent rect. 3 6
413 50.99 precipitation 0.1 720 < th dose independent rect. 15 8
419 50.99 precipitation 0.1 720 < th dose dependent rect. 15 8
423 51.02 wind 9.0 720 < th dose independent rect. 15 8
433 51.05 precipitation 0.1 720 < th dose independent rect. 3 8
434 51.05 wind 1.0 10 < th dose independent rect. 7 20
436 51.05 precipitation 0.1 720 < th dose dependent rect. 3 8
447 51.10 atmosphere 1000.0 10 > th dose independent rect. 14 12
464 51.15 wind 1.0 1440 > th dose independent rect. 2 1
485 51.15 atmosphere 995.0 30 > th dose dependent rect. 3 23
489 51.18 temperature 25.0 30 > th dose independent rect. 7 1
491 51.18 wind 3.0 10 < th dose dependent rect. 22 5
499 51.22 humidity 90.0 10 > th dose independent rect. 22 5
504 51.24 temperature 15.0 720 > th dose independent rect. 8 7
505 51.24 wind 3.0 30 < th dose dependent rect. 2 6
506 51.25 atmosphere 995.0 720 > th dose independent rect. 15 8
510 51.27 wind 1.0 1440 < th dose independent rect. 1 1
518 51.31 atmosphere 1015.0 1440 < th dose independent rect. 3 1
521 51.31 wind 3.0 30 < th dose dependent rect. 2 11
526 51.33 humidity 80.0 14400 < th dose dependent rect. 21 13
553 51.35 wind 1.0 10 > th dose independent sin 15 NA
569 51.38 atmosphere 1000.0 30 > th dose independent rect. 8 23
576 51.40 wind 1.0 14400 < th dose independent rect. 2 1
582 51.41 humidity 70.0 14400 > th dose independent rect. 8 1
584 51.41 wind 1.0 14400 < th dose dependent rect. 2 1
588 51.41 wind 3.0 30 < th dose dependent rect. 11 16
592 51.43 wind 1.0 14400 > th dose independent rect. 2 1
597 51.44 radiation 20.0 720 > th dose independent rect. 15 1
600 51.44 humidity 70.0 4320 > th dose dependent rect. 3 9
602 51.44 wind 9.0 30 < th dose dependent rect. 3 23
605 51.46 atmosphere 995.0 720 > th dose independent rect. 8 7
606 51.46 temperature 15.0 10 > th dose independent rect. 14 12
609 51.46 wind 3.0 30 < th dose dependent rect. 20 7
620 51.48 humidity 50.0 720 > th dose independent rect. 23 16
624 51.49 temperature 15.0 720 > th dose independent rect. 14 1
638 51.49 atmosphere 995.0 720 > th dose independent rect. 3 23
639 51.49 humidity 90.0 90 < th dose dependent rect. 2 1
645 51.50 humidity 70.0 14400 < th dose independent rect. 8 2
680 51.52 wind 1.0 10 > th dose independent rect. 21 10
686 51.53 wind 5.0 720 < th dose independent rect. 2 1
687 51.53 humidity 90.0 4320 < th dose independent rect. 4 5
688 51.53 radiation 40.0 30 < th dose independent rect. 14 12
708 51.54 humidity 70.0 14400 > th dose dependent rect. 7 2
717 51.55 humidity 90.0 4320 > th dose independent rect. 3 8
726 51.55 wind 3.0 30 < th dose dependent rect. 13 14
729 51.56 humidity 90.0 4320 > th dose independent rect. 4 5
741 51.57 atmosphere 1015.0 720 < th dose independent rect. 3 17
750 51.58 atmosphere 995.0 720 > th dose independent rect. 14 1
763 51.58 humidity 60.0 4320 > th dose dependent rect. 23 13
771 51.59 wind 9.0 720 < th dose independent rect. 15 17
773 51.59 wind 1.0 30 > th dose independent rect. 3 23
827 51.60 atmosphere 1000.0 10 > th dose independent rect. 2 12
852 51.61 humidity 90.0 1440 > th dose dependent rect. 2 15
853 51.61 humidity 50.0 30 > th dose dependent rect. 3 23
855 51.62 wind 5.0 14400 < th dose independent rect. 9 8
858 51.62 humidity 60.0 10 > th dose independent rect. 14 12
861 51.62 humidity 80.0 720 > th dose dependent rect. 3 1
867 51.62 wind 3.0 30 < th dose dependent rect. 16 11
875 51.63 humidity 80.0 14400 < th dose independent rect. 7 6
944 51.65 humidity 70.0 4320 > th dose dependent sin 5 NA
967 51.66 atmosphere 995.0 720 > th dose independent rect. 15 23
991 51.67 wind 5.0 14400 > th dose independent rect. 10 7
994 51.67 radiation 20.0 720 > th dose independent rect. 15 16