Os12g0528400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutathione synthetase.
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Os12g0528400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutathione synthetase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.18 | 0.206 | 11 | -0.657 | 0.408 | 0.321 | 0.106 | 1.72 | -0.146 | 4.29 | 0.8204 | 4318 | -- | -- |
| 20.2 | 0.209 | 11 | -0.297 | 0.377 | 0.275 | -0.0215 | -- | -0.0276 | 4.23 | 20.35 | 12531 | -- | -- |
| 19.2 | 0.204 | 11 | -0.655 | 0.408 | 0.322 | -- | 1.72 | -0.145 | 4.22 | 0.8 | 4308 | -- | -- |
| 20.17 | 0.209 | 11 | -0.29 | 0.378 | 0.277 | -- | -- | -0.0294 | 4.08 | 20.03 | 12513 | -- | -- |
| 23.74 | 0.227 | 11 | -0.479 | -- | 0.584 | -- | 1.88 | -0.0886 | -- | 0.8613 | 9286 | -- | -- |
| 22.81 | 0.224 | 11 | -0.319 | 0.393 | -- | 0.0758 | -- | -0.108 | 4.35 | -- | -- | -- | -- |
| 22.82 | 0.224 | 11 | -0.32 | 0.394 | -- | -- | -- | -0.108 | 4.33 | -- | -- | -- | -- |
| 28.1 | 0.247 | 11 | -0.307 | -- | 0.256 | -- | -- | -0.0222 | -- | 20.06 | 13544 | -- | -- |
| 21.49 | 0.216 | 11 | -- | 0.396 | 0.267 | -- | -- | -0.00928 | 3.76 | 10 | 21322 | -- | -- |
| 31.16 | 0.261 | 11 | -0.304 | -- | -- | -- | -- | -0.0975 | -- | -- | -- | -- | -- |
| 25.51 | 0.236 | 11 | -- | 0.388 | -- | -- | -- | -0.0723 | 4.35 | -- | -- | -- | -- |
| 29.27 | 0.252 | 11 | -- | -- | 0.266 | -- | -- | -0.00848 | -- | 10.01 | 25104 | -- | -- |
| 33.6 | 0.271 | 11 | -- | -- | -- | -- | -- | -0.0638 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 2 | 18.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 3 | 18.83 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 4 | 18.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 5 | 18.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 6 | 18.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 9 | 18.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 11 | 18.87 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 13 | 18.87 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 14 | 18.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 15 | 18.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 28 | 18.95 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 29 | 18.96 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 30 | 18.96 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 31 | 18.96 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 32 | 18.96 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 44 | 18.97 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 50 | 18.98 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 57 | 18.98 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 100 | 19.02 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 110 | 19.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 119 | 19.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 149 | 19.06 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 150 | 19.06 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 164 | 19.08 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 208 | 19.11 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 241 | 19.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 252 | 19.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 253 | 19.13 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 257 | 19.13 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 272 | 19.13 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 284 | 19.14 | temperature | 20.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 286 | 19.14 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 299 | 19.14 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 334 | 19.14 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 339 | 19.15 | temperature | 20.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 376 | 19.15 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 405 | 19.15 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 420 | 19.15 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 24 | 22 |
| 434 | 19.16 | temperature | 20.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 437 | 19.16 | temperature | 25.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 438 | 19.16 | temperature | 20.0 | 43200 | > th | dose independent | no | NA | NA |
| 439 | 19.16 | temperature | 20.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 441 | 19.16 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 442 | 19.16 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 444 | 19.16 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 447 | 19.16 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 452 | 19.16 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 463 | 19.16 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 509 | 19.16 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 560 | 19.16 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 589 | 19.17 | temperature | 20.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 594 | 19.17 | temperature | 25.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 596 | 19.17 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 598 | 19.17 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 614 | 19.17 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 635 | 19.17 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 698 | 19.17 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 708 | 19.17 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 761 | 19.18 | temperature | 20.0 | 43200 | < th | dose independent | no | NA | NA |
| 781 | 19.18 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 788 | 19.18 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 959 | 19.19 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 11 |