Os12g0527500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os12g0527500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 253.07 | 0.747 | 4.61 | 3.93 | 0.495 | -4.34 | -1.06 | 3.57 | 0.851 | 23 | 26 | 5373 | -- | -- |
| 269.88 | 0.765 | 4.7 | 3.27 | 0.477 | -4.17 | -1.44 | -- | 0.698 | 21.3 | 25.9 | 5335 | -- | -- |
| 257.33 | 0.747 | 4.61 | 3.94 | 0.52 | -4.33 | -- | 3.4 | 0.842 | 22.3 | 26 | 5357 | -- | -- |
| 264.28 | 0.757 | 4.75 | 2.97 | 0.505 | -4.13 | -- | -- | 0.572 | 22.5 | 26 | 5378 | -- | -- |
| 271.8 | 0.768 | 4.58 | 3.95 | -- | -4.24 | -- | 3.43 | 0.919 | -- | 26 | 5640 | -- | -- |
| 754.15 | 1.29 | 4.92 | 1.2 | 0.0263 | -- | 1.6 | -- | -0.231 | 13.9 | -- | -- | -- | -- |
| 761.66 | 1.29 | 4.92 | 1.25 | 0.218 | -- | -- | -- | -0.219 | 19.1 | -- | -- | -- | -- |
| 278.68 | 0.778 | 4.73 | 2.94 | -- | -4.09 | -- | -- | 0.601 | -- | 26.1 | 5492 | -- | -- |
| 469.7 | 1.01 | 4.74 | -- | 0.428 | -3.31 | -- | -- | 0.245 | 22.5 | 26 | 5390 | -- | -- |
| 764.16 | 1.29 | 4.91 | 1.24 | -- | -- | -- | -- | -0.223 | -- | -- | -- | -- | -- |
| 802.74 | 1.33 | 4.95 | -- | 0.206 | -- | -- | -- | -0.358 | 19.5 | -- | -- | -- | -- |
| 439.18 | 0.976 | 4.88 | -- | -- | -2.89 | -- | -- | -0.0587 | -- | 28.44 | 5512 | -- | -- |
| 805 | 1.32 | 4.95 | -- | -- | -- | -- | -- | -0.361 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 232.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 2 | 233.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 4 | 233.74 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 5 | 233.80 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 7 | 234.03 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 16 |
| 9 | 234.08 | temperature | 20 | 43200 | > th | dose independent | rect. | 11 | 14 |
| 14 | 234.30 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 18 | 234.46 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 23 | 234.50 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 44 | 235.03 | temperature | 20 | 43200 | > th | dose independent | sin | 17 | NA |
| 45 | 235.05 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 16 |
| 60 | 235.50 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 74 | 235.75 | temperature | 20 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 88 | 235.86 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 109 | 236.26 | temperature | 20 | 43200 | < th | dose independent | sin | 17 | NA |
| 160 | 237.02 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 196 | 237.48 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 197 | 237.49 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 214 | 237.62 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 218 | 237.64 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 241 | 237.85 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 246 | 237.88 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 275 | 238.05 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 315 | 238.31 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 317 | 238.32 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 320 | 238.34 | temperature | 25 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 427 | 239.03 | temperature | 20 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 505 | 239.74 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 517 | 239.81 | temperature | 25 | 43200 | < th | dose dependent | rect. | 13 | 7 |
| 563 | 240.19 | temperature | 25 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 636 | 240.85 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 645 | 240.93 | temperature | 20 | 43200 | < th | dose independent | sin | 5 | NA |
| 656 | 241.08 | humidity | 90 | 43200 | > th | dose dependent | sin | 18 | NA |
| 677 | 241.29 | temperature | 20 | 43200 | > th | dose independent | sin | 5 | NA |
| 683 | 241.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 706 | 241.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 752 | 241.98 | temperature | 25 | 43200 | < th | dose dependent | sin | 19 | NA |
| 842 | 242.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 855 | 242.89 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 880 | 243.10 | temperature | 25 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 932 | 243.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 998 | 244.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 15 |