Os12g0524700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial 60S ribosomal protein L16.
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Os12g0524700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial 60S ribosomal protein L16.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.33 | 0.551 | 13.8 | 3.7 | 0.182 | -2.2 | 0.262 | -7.07 | 0.306 | 0.491 | 19.33 | 4924 | -- | -- |
| 146.58 | 0.568 | 13.9 | 3.65 | 0.14 | 1.09 | 0.437 | -- | 0.28 | 0.206 | 19.33 | 4924 | -- | -- |
| 137.48 | 0.546 | 13.8 | 3.64 | 0.166 | -2.38 | -- | -7.44 | 0.305 | 0.335 | 19 | 5027 | -- | -- |
| 143.09 | 0.557 | 13.9 | 3.8 | 0.202 | 1.4 | -- | -- | 0.305 | 0.819 | 16.2 | 5399 | -- | -- |
| 139.12 | 0.549 | 13.7 | 3.5 | -- | -4.72 | -- | -12.7 | 0.3 | -- | 17.92 | 4930 | -- | -- |
| 152.42 | 0.579 | 13.9 | 3.49 | 0.186 | -- | 0.33 | -- | 0.229 | 0.492 | -- | -- | -- | -- |
| 152.89 | 0.579 | 13.9 | 3.48 | 0.185 | -- | -- | -- | 0.227 | 0.689 | -- | -- | -- | -- |
| 145.51 | 0.562 | 13.9 | 3.82 | -- | 1.37 | -- | -- | 0.317 | -- | 16.27 | 5614 | -- | -- |
| 239.93 | 0.721 | 14.2 | -- | 0.155 | -2.7 | -- | -- | -0.766 | 1.5 | 22.9 | 32767 | -- | -- |
| 155.03 | 0.582 | 13.9 | 3.49 | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
| 472.08 | 1.02 | 14 | -- | 0.243 | -- | -- | -- | -0.161 | 1.37 | -- | -- | -- | -- |
| 224.9 | 0.698 | 14.2 | -- | -- | -2.55 | -- | -- | -0.903 | -- | 27.6 | 47520 | -- | -- |
| 475.71 | 1.02 | 14 | -- | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.08 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 2 | 131.00 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 4 | 131.35 | humidity | 70 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 17 | 132.73 | humidity | 60 | 43200 | < th | dose dependent | sin | 3 | NA |
| 18 | 132.73 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 20 | 132.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 21 | 132.74 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 12 |
| 95 | 133.27 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 96 | 133.27 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 112 | 133.32 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 11 |
| 146 | 133.38 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 187 | 133.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 211 | 133.43 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 233 | 133.47 | humidity | 60 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 234 | 133.50 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 256 | 133.70 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 270 | 133.84 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 272 | 133.85 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 283 | 133.89 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 295 | 134.02 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 300 | 134.04 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 358 | 134.37 | wind | 1 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 378 | 134.48 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 391 | 134.58 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 4 |
| 401 | 134.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 414 | 134.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 444 | 134.91 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 448 | 134.94 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 453 | 134.99 | humidity | 60 | 43200 | > th | dose independent | sin | 10 | NA |
| 469 | 135.07 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 496 | 135.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 499 | 135.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 501 | 135.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 509 | 135.33 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 510 | 135.34 | humidity | 50 | 43200 | > th | dose independent | sin | 15 | NA |
| 514 | 135.37 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 517 | 135.38 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 532 | 135.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 544 | 135.63 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 547 | 135.65 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 563 | 135.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 583 | 135.84 | wind | 1 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 584 | 135.84 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 586 | 135.85 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 589 | 135.85 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 593 | 135.87 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 596 | 135.90 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 601 | 135.91 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 12 | 11 |
| 613 | 135.98 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 616 | 136.00 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 618 | 136.00 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 644 | 136.08 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 645 | 136.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 649 | 136.09 | radiation | 10 | 30 | > th | dose independent | rect. | 16 | 15 |
| 665 | 136.12 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 672 | 136.14 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 678 | 136.16 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 686 | 136.18 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 687 | 136.19 | radiation | 20 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 707 | 136.20 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 712 | 136.22 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 15 |
| 722 | 136.25 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 742 | 136.29 | radiation | 10 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 760 | 136.31 | wind | 1 | 43200 | < th | dose independent | sin | 0 | NA |
| 777 | 136.31 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 21 |
| 781 | 136.32 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 782 | 136.32 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 801 | 136.32 | radiation | 10 | 30 | > th | dose dependent | rect. | 16 | 15 |
| 820 | 136.36 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 821 | 136.36 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 838 | 136.39 | humidity | 50 | 43200 | < th | dose independent | sin | 15 | NA |
| 840 | 136.39 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 851 | 136.42 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 871 | 136.45 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 927 | 136.54 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 931 | 136.54 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 17 | NA |
| 973 | 136.64 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 974 | 136.64 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 8 |