Os12g0523000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0523000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 293.35 | 0.805 | 3.71 | 1.71 | 0.545 | -2.52 | -1.09 | 1.15 | 0.682 | 21.6 | 10.08 | 718 | -- | -- |
| 294.22 | 0.799 | 3.73 | 1.51 | 0.547 | -2.5 | -0.884 | -- | 0.63 | 21.6 | 13.24 | 721 | -- | -- |
| 297.05 | 0.803 | 3.73 | 1.58 | 0.545 | -2.51 | -- | 0.148 | 0.638 | 22.1 | 6.287 | 762 | -- | -- |
| 297.04 | 0.803 | 3.73 | 1.55 | 0.556 | -2.53 | -- | -- | 0.633 | 21.7 | 13.83 | 722 | -- | -- |
| 298.8 | 0.805 | 3.68 | 1.71 | -- | -2.14 | -- | 0.804 | 0.711 | -- | -10.3 | 1867 | -- | -- |
| 374.27 | 0.907 | 3.8 | 0.88 | 0.0592 | -- | 1.25 | -- | 0.247 | 8.26 | -- | -- | -- | -- |
| 377.7 | 0.91 | 3.8 | 0.911 | 0.171 | -- | -- | -- | 0.243 | 3.91 | -- | -- | -- | -- |
| 299.59 | 0.806 | 3.71 | 1.63 | -- | -2.16 | -- | -- | 0.65 | -- | -13.44 | 1885 | -- | -- |
| 350.64 | 0.872 | 3.78 | -- | 0.4 | -2 | -- | -- | 0.38 | 18.7 | 13.5 | 399 | -- | -- |
| 379.3 | 0.91 | 3.8 | 0.918 | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
| 399.56 | 0.935 | 3.82 | -- | 0.189 | -- | -- | -- | 0.141 | 3.85 | -- | -- | -- | -- |
| 357.07 | 0.88 | 3.78 | -- | -- | -1.66 | -- | -- | 0.337 | -- | 13.63 | 394 | -- | -- |
| 401.52 | 0.935 | 3.83 | -- | -- | -- | -- | -- | 0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 290.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 2 | 291.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 5 | 291.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 10 | 291.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 12 | 291.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 13 | 292.03 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 17 | 292.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 27 | 292.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 41 | 293.03 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 42 | 293.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 57 | 293.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 59 | 293.35 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 60 | 293.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 72 | 293.60 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 92 | 293.91 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 2 |
| 98 | 294.01 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 2 |
| 107 | 294.10 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 109 | 294.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 120 | 294.26 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 155 | 294.71 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 157 | 294.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 165 | 294.84 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 228 | 295.24 | temperature | 10 | 1440 | > th | dose dependent | sin | 5 | NA |
| 282 | 295.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 318 | 295.74 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 342 | 295.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 419 | 296.18 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 15 |
| 421 | 296.19 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 528 | 296.46 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 20 |
| 634 | 296.65 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 640 | 296.66 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 645 | 296.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 651 | 296.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 662 | 296.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 669 | 296.72 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 683 | 296.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 702 | 296.76 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 15 |
| 713 | 296.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 724 | 296.79 | temperature | 30 | 1440 | < th | dose dependent | sin | 6 | NA |
| 762 | 296.82 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 800 | 296.87 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 845 | 296.94 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 872 | 297.00 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 906 | 297.05 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 910 | 297.06 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 915 | 297.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 19 |
| 930 | 297.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |