Os12g0518200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os12g0518200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 494.76 | 1.05 | 7.57 | -3.09 | 2.63 | 2.24 | 1.24 | -1.38 | -1.46 | 7.18 | 90.67 | 3573 | -- | -- |
| 496.84 | 1.04 | 7.56 | -3 | 2.6 | 2.16 | 1.49 | -- | -1.43 | 7.22 | 90.21 | 3610 | -- | -- |
| 498.56 | 1.04 | 7.56 | -3.1 | 2.64 | 2.27 | -- | -1.78 | -1.45 | 7.14 | 90.06 | 3574 | -- | -- |
| 502.74 | 1.04 | 7.56 | -2.97 | 2.61 | 2.14 | -- | -- | -1.42 | 7.17 | 90.02 | 3593 | -- | -- |
| 781.81 | 1.3 | 7.65 | -2.86 | -- | 2.11 | -- | -1.84 | -1.57 | -- | 97.22 | 15832 | -- | -- |
| 563.42 | 1.11 | 7.51 | -3.01 | 2.35 | -- | 1.47 | -- | -1.14 | 7.04 | -- | -- | -- | -- |
| 569.09 | 1.12 | 7.51 | -2.98 | 2.35 | -- | -- | -- | -1.14 | 7.01 | -- | -- | -- | -- |
| 785.71 | 1.31 | 7.65 | -2.61 | -- | 2.05 | -- | -- | -1.51 | -- | 114.7 | 15815 | -- | -- |
| 664.9 | 1.2 | 7.51 | -- | 2.55 | 2.39 | -- | -- | -1.27 | 7.28 | 73.71 | 16394 | -- | -- |
| 859.79 | 1.37 | 7.56 | -2.94 | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
| 803.63 | 1.33 | 7.43 | -- | 2.32 | -- | -- | -- | -0.811 | 7.1 | -- | -- | -- | -- |
| 899.33 | 1.4 | 7.54 | -- | -- | 3.32 | -- | -- | -1.03 | -- | 77.35 | 30195 | -- | -- |
| 1087.15 | 1.54 | 7.49 | -- | -- | -- | -- | -- | -0.775 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 484.09 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 4 | 487.71 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 14 | 490.68 | humidity | 90 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 27 | 491.85 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 29 | 491.96 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 33 | 492.13 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 44 | 492.90 | humidity | 70 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 45 | 492.98 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 53 | 493.27 | humidity | 70 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 63 | 493.60 | humidity | 60 | 14400 | > th | dose dependent | rect. | 19 | 4 |
| 64 | 493.64 | humidity | 80 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 83 | 494.08 | humidity | 50 | 14400 | > th | dose dependent | rect. | 16 | 8 |
| 101 | 494.33 | humidity | 90 | 14400 | < th | dose dependent | sin | 14 | NA |
| 148 | 494.96 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 164 | 495.14 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 317 | 496.63 | humidity | 50 | 14400 | > th | dose dependent | sin | 15 | NA |
| 380 | 497.13 | humidity | 80 | 14400 | > th | dose independent | sin | 15 | NA |
| 408 | 497.36 | humidity | 50 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 509 | 498.02 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 604 | 498.71 | humidity | 80 | 14400 | < th | dose independent | sin | 15 | NA |
| 719 | 499.28 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 728 | 499.35 | humidity | 80 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 737 | 499.39 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 858 | 500.12 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 892 | 500.31 | humidity | 90 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 929 | 500.37 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 21 |
| 930 | 500.38 | humidity | 90 | 14400 | < th | dose dependent | no | NA | NA |
| 935 | 500.38 | humidity | 90 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 970 | 500.49 | humidity | 50 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 999 | 500.55 | humidity | 50 | 14400 | > th | dose dependent | no | NA | NA |