Os12g0518100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0518100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	0.0545	(0.271)	R²	:	0.18
β₁	:	6.94	(0.698)	R²_dD	:	8.53	R²_D	:	-29
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-378	(38.6)	R²_dE	:	2800	R²_E	:	-2820
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	983	(100)	R²_dD*E	:	2780	R²_D*E	:	-2760
γ₁	:	0.05	(0.0599)	R²_dN8	:	0.00197	R²_N8	:	-20.8
σ	:	0.525
deviance	:	126.91
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	50
memory length	:	10
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	11
open length of G	:	1

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
125.96	0.523	0.0545	6.94	0.123	-378	-0.248	983	0.05	4.73	50	10	11	1
152.16	0.579	2.69	0.184	0.0751	-0.322	0.518	--	0.0465	10.5	50	10	11	1
126.12	0.523	0.0545	6.94	0.123	-378	--	983	0.05	4.73	50	10	11	1
152.67	0.579	2.69	0.197	0.129	-0.214	--	--	0.0457	6.98	50	10	11	1
126.91	0.525	0.0545	6.94	--	-378	--	983	0.05	--	50	10	11	1
152.45	0.579	2.69	0.173	0.0754	--	0.47	--	0.0479	10.2	--	--	--	--
152.8	0.579	2.69	0.188	0.128	--	--	--	0.0464	6.83	--	--	--	--
153.54	0.58	2.69	0.199	--	-0.201	--	--	0.0481	--	46.67	76	11	1.04
153.68	0.581	2.7	--	0.131	-0.14	--	--	0.0244	6.84	43.68	53	11	1.15
153.66	0.579	2.69	0.191	--	--	--	--	0.0489	--	--	--	--	--
153.73	0.58	2.7	--	0.13	--	--	--	0.0255	6.74	--	--	--	--
154.57	0.581	2.7	--	--	-0.129	--	--	0.0267	--	42.38	27	11.6	1.41
154.62	0.58	2.7	--	--	--	--	--	0.0277	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	125.96	humidity	50.0	10	< th	dose independent	rect.	11	1
93	125.96	humidity	50.0	10	< th	dose dependent	rect.	11	1
185	138.38	radiation	1.0	43200	< th	dose dependent	rect.	3	1
186	138.94	temperature	25.0	90	< th	dose dependent	rect.	12	1
187	139.55	temperature	25.0	10	< th	dose independent	rect.	13	1
199	140.09	temperature	20.0	30	> th	dose dependent	rect.	2	1
200	140.10	wind	1.0	30	< th	dose independent	rect.	2	1
201	140.14	temperature	20.0	30	> th	dose independent	rect.	2	1
202	140.16	humidity	80.0	30	> th	dose independent	rect.	2	1
203	140.24	humidity	80.0	30	> th	dose dependent	rect.	2	1
204	140.25	temperature	25.0	90	> th	dose independent	rect.	1	3
208	140.35	wind	3.0	30	< th	dose dependent	rect.	2	1
216	140.49	atmosphere	1005.0	30	> th	dose dependent	rect.	2	1
217	140.49	temperature	25.0	90	> th	dose dependent	rect.	1	3
223	140.55	atmosphere	1005.0	30	> th	dose independent	rect.	2	1
228	140.58	temperature	10.0	30	> th	dose independent	rect.	2	1
230	140.58	temperature	30.0	30	< th	dose independent	rect.	2	1
231	140.58	humidity	50.0	30	> th	dose independent	rect.	2	1
234	140.58	atmosphere	995.0	30	> th	dose independent	rect.	2	1
235	140.58	atmosphere	1010.0	30	< th	dose independent	rect.	2	1
237	140.58	radiation	1.0	30	< th	dose independent	rect.	2	1
242	140.58	precipitation	0.1	30	< th	dose independent	rect.	2	1
243	140.58	temperature	10.0	30	> th	dose independent	rect.	3	23
244	140.58	radiation	1.0	30	< th	dose dependent	rect.	2	1
249	140.58	precipitation	0.1	30	< th	dose dependent	rect.	2	1
255	140.67	wind	3.0	720	> th	dose dependent	rect.	24	3
256	140.71	atmosphere	1015.0	30	< th	dose dependent	rect.	2	1
258	140.71	wind	5.0	720	> th	dose dependent	rect.	20	13
262	140.79	wind	3.0	720	> th	dose independent	rect.	24	3
265	140.83	wind	3.0	720	> th	dose dependent	rect.	24	1
266	140.86	wind	9.0	1440	< th	dose independent	rect.	3	1
267	140.86	temperature	10.0	1440	> th	dose independent	rect.	3	1
270	140.86	temperature	30.0	1440	< th	dose independent	rect.	3	1
274	140.86	humidity	50.0	1440	> th	dose independent	rect.	3	1
283	140.86	atmosphere	995.0	1440	> th	dose independent	rect.	3	1
284	140.86	radiation	1.0	1440	< th	dose independent	rect.	3	1
304	140.86	temperature	10.0	1440	> th	dose independent	rect.	4	23
307	140.86	radiation	1.0	1440	< th	dose dependent	rect.	3	1
317	140.93	wind	5.0	720	> th	dose independent	rect.	21	6
321	140.99	wind	5.0	720	> th	dose independent	rect.	20	13
328	141.13	wind	7.0	1440	< th	dose independent	rect.	22	11
332	141.14	wind	3.0	720	> th	dose dependent	rect.	21	6
341	141.27	temperature	30.0	30	< th	dose dependent	rect.	2	1
364	141.50	wind	5.0	1440	< th	dose independent	rect.	20	14
368	141.52	atmosphere	995.0	30	> th	dose independent	rect.	3	23
375	141.62	wind	7.0	1440	> th	dose independent	rect.	24	9
388	141.71	wind	1.0	30	> th	dose independent	rect.	2	1
441	141.88	precipitation	0.1	30	< th	dose independent	rect.	3	23
444	141.88	precipitation	0.1	30	< th	dose dependent	rect.	3	23
454	141.96	wind	7.0	720	> th	dose dependent	rect.	24	9
461	142.03	wind	5.0	720	> th	dose independent	sin	10	NA
472	142.09	radiation	10.0	10	< th	dose independent	rect.	8	2
542	142.26	wind	3.0	1440	> th	dose dependent	rect.	22	1
545	142.29	wind	5.0	1440	< th	dose independent	rect.	21	3
547	142.29	temperature	30.0	10	< th	dose dependent	rect.	13	1
548	142.30	wind	3.0	720	< th	dose independent	rect.	23	4
564	142.38	wind	5.0	1440	< th	dose independent	sin	10	NA
566	142.39	wind	5.0	90	> th	dose independent	rect.	13	1
585	142.52	wind	5.0	1440	< th	dose independent	rect.	22	1
586	142.52	wind	5.0	720	< th	dose independent	rect.	19	8
608	142.64	wind	5.0	90	> th	dose dependent	rect.	12	2
626	142.72	wind	5.0	1440	> th	dose independent	rect.	22	1
643	142.79	wind	5.0	720	< th	dose independent	rect.	21	8
663	142.89	wind	5.0	1440	< th	dose independent	rect.	19	6
665	142.89	wind	9.0	30	< th	dose independent	rect.	3	23
714	143.06	wind	5.0	720	> th	dose dependent	sin	10	NA
742	143.13	atmosphere	1005.0	10	> th	dose dependent	rect.	1	3
767	143.20	precipitation	0.1	720	> th	dose independent	rect.	24	1
770	143.20	precipitation	0.1	720	> th	dose dependent	rect.	24	1
782	143.21	temperature	20.0	90	< th	dose independent	rect.	24	18
790	143.22	temperature	20.0	90	< th	dose independent	rect.	24	9
792	143.22	temperature	20.0	90	< th	dose independent	rect.	24	15
799	143.23	temperature	20.0	90	< th	dose independent	rect.	24	12
818	143.26	temperature	20.0	10	< th	dose dependent	rect.	6	3
821	143.28	temperature	20.0	10	< th	dose independent	rect.	6	2
868	143.40	temperature	20.0	90	< th	dose independent	sin	3	NA
889	143.43	temperature	20.0	30	> th	dose independent	rect.	3	10
924	143.52	radiation	10.0	10	< th	dose dependent	rect.	10	1
945	143.58	temperature	20.0	10	< th	dose independent	rect.	6	12
949	143.59	temperature	20.0	10	< th	dose independent	rect.	6	10
951	143.59	atmosphere	1005.0	10	> th	dose dependent	rect.	13	1
953	143.60	temperature	20.0	10	< th	dose independent	rect.	6	8
958	143.61	temperature	20.0	10	< th	dose independent	rect.	6	6