Os12g0518000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0518000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.56 | 0.669 | 4.64 | -0.999 | 0.631 | 0.591 | 0.909 | 4.17 | -0.432 | 5.11 | 10 | 4316 | -- | -- |
| 214.01 | 0.681 | 4.7 | -1.33 | 0.68 | 0.668 | 1.17 | -- | -0.53 | 4.86 | 15.42 | 4332 | -- | -- |
| 204.53 | 0.666 | 4.63 | -1 | 0.642 | 0.612 | -- | 4.2 | -0.437 | 5.36 | 10 | 4315 | -- | -- |
| 213.58 | 0.681 | 4.69 | -1.44 | 0.775 | 0.814 | -- | -- | -0.546 | 5.13 | 15.18 | 3277 | -- | -- |
| 225.71 | 0.7 | 4.64 | -0.985 | -- | 0.637 | -- | 4.23 | -0.43 | -- | 10 | 4288 | -- | -- |
| 223.02 | 0.7 | 4.66 | -1.44 | 0.651 | -- | 1.05 | -- | -0.451 | 4.89 | -- | -- | -- | -- |
| 225.66 | 0.703 | 4.66 | -1.45 | 0.663 | -- | -- | -- | -0.456 | 5.2 | -- | -- | -- | -- |
| 237.83 | 0.718 | 4.69 | -1.4 | -- | 0.761 | -- | -- | -0.515 | -- | 15.86 | 4257 | -- | -- |
| 249.51 | 0.736 | 4.67 | -- | 0.644 | 1.08 | -- | -- | -0.364 | 5.01 | 9.881 | 4304 | -- | -- |
| 248.64 | 0.737 | 4.67 | -1.42 | -- | -- | -- | -- | -0.439 | -- | -- | -- | -- | -- |
| 280.83 | 0.784 | 4.63 | -- | 0.638 | -- | -- | -- | -0.295 | 5.29 | -- | -- | -- | -- |
| 267.08 | 0.761 | 4.67 | -- | -- | 1.46 | -- | -- | -0.458 | -- | 9.84 | 4304 | -- | -- |
| 302.09 | 0.811 | 4.64 | -- | -- | -- | -- | -- | -0.282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.92 | temperature | 20.0 | 90 | < th | dose independent | rect. | 6 | 14 |
| 2 | 193.60 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 4 | 194.62 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 7 | 14 |
| 9 | 194.96 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 10 | 3 |
| 11 | 195.04 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 16 | 195.35 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 24 | 195.91 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 30 | 196.10 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 33 | 196.22 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 41 | 196.48 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 2 |
| 52 | 197.17 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 82 | 197.59 | wind | 3.0 | 90 | > th | dose dependent | rect. | 6 | 3 |
| 91 | 198.03 | humidity | 80.0 | 90 | < th | dose independent | rect. | 6 | 2 |
| 96 | 198.64 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 6 | 2 |
| 98 | 198.81 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 171 | 200.46 | radiation | 10.0 | 4320 | > th | dose independent | sin | 2 | NA |
| 203 | 201.56 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 207 | 201.63 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 208 | 201.69 | wind | 3.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 209 | 201.70 | wind | 5.0 | 10 | > th | dose independent | rect. | 2 | 7 |
| 210 | 201.71 | wind | 5.0 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 216 | 201.80 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 220 | 201.91 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 227 | 202.03 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 232 | 202.13 | wind | 5.0 | 10 | > th | dose independent | rect. | 7 | 2 |
| 261 | 202.31 | wind | 3.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 282 | 202.43 | wind | 5.0 | 10 | > th | dose dependent | rect. | 7 | 2 |
| 296 | 202.57 | radiation | 10.0 | 4320 | > th | dose independent | no | NA | NA |
| 384 | 202.67 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 404 | 202.76 | wind | 5.0 | 90 | > th | dose independent | rect. | 6 | 3 |
| 492 | 203.50 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 3 | 12 |
| 498 | 203.51 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 22 | 17 |
| 518 | 203.78 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 541 | 204.02 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 550 | 204.04 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 21 | 18 |
| 584 | 204.34 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 608 | 204.43 | radiation | 20.0 | 270 | > th | dose independent | rect. | 6 | 1 |
| 692 | 204.83 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 703 | 204.87 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 725 | 204.88 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 726 | 204.89 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 741 | 204.99 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 742 | 205.00 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 743 | 205.01 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 792 | 205.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 795 | 205.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 810 | 205.11 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 811 | 205.11 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 834 | 205.14 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 862 | 205.26 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 22 |
| 865 | 205.27 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 868 | 205.28 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 887 | 205.29 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 891 | 205.30 | humidity | 50.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 937 | 205.33 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 0 | NA |