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Os12g0516700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0214) R2 : 0.571
β1 : -1.65 (0.0785) R2dD : 0.43 R2D : 0.476
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.397 (0.0457) R2dN8 : 0.0948 R2N8 : 0.141
σ : 0.402
deviance : 74.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.7 0.347 13.1 -2.78 0.171 0.286 0.636 -4.03 0.0583 4.92 16 3861 -- --
68.08 0.387 12.9 -1.77 0.344 0.628 0.432 -- 0.306 3.7 11.89 7897 -- --
55.51 0.347 13.1 -2.79 0.18 0.332 -- -4.01 0.053 4.88 16.2 3423 -- --
68.61 0.388 12.9 -1.77 0.343 0.621 -- -- 0.305 3.44 12.52 8045 -- --
57.22 0.352 13.1 -2.77 -- 0.336 -- -3.99 0.0585 -- 16 3442 -- --
71.77 0.397 12.9 -1.65 0.177 -- 0.487 -- 0.394 5.15 -- -- -- --
72.31 0.398 12.9 -1.65 0.181 -- -- -- 0.392 4.54 -- -- -- --
70.26 0.39 12.9 -1.8 -- 0.462 -- -- 0.35 -- 11.55 1497 -- --
88.7 0.439 12.8 -- 0.196 -1.1 -- -- 0.985 4.1 20.9 47520 -- --
74.06 0.402 12.9 -1.65 -- -- -- -- 0.397 -- -- -- -- --
144.37 0.562 12.9 -- 0.15 -- -- -- 0.576 4.81 -- -- -- --
90.77 0.444 12.8 -- -- -1.09 -- -- 0.986 -- 20.9 47520 -- --
145.57 0.563 12.9 -- -- -- -- -- 0.579 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.97 precipitation 0.1 43200 < th dose independent rect. 7 3
2 50.97 precipitation 0.1 43200 < th dose dependent rect. 7 3
3 50.99 precipitation 0.1 43200 > th dose independent rect. 7 3
4 51.01 precipitation 0.1 43200 > th dose dependent rect. 7 3
9 51.20 humidity 80.0 43200 > th dose dependent rect. 11 3
10 51.21 precipitation 0.1 43200 > th dose independent rect. 5 7
11 51.22 precipitation 0.1 43200 > th dose dependent rect. 5 7
12 51.26 precipitation 0.1 43200 < th dose independent rect. 5 7
13 51.26 humidity 80.0 43200 > th dose dependent rect. 12 1
14 51.26 precipitation 0.1 43200 < th dose dependent rect. 5 7
17 51.31 humidity 90.0 43200 > th dose dependent rect. 9 2
18 51.32 humidity 90.0 43200 > th dose dependent rect. 9 5
46 51.51 humidity 90.0 43200 > th dose independent rect. 9 5
59 51.66 humidity 90.0 43200 > th dose independent rect. 9 3
61 51.68 temperature 25.0 43200 < th dose independent rect. 13 2
73 51.78 wind 9.0 43200 > th dose dependent rect. 18 1
79 51.80 temperature 25.0 43200 > th dose independent rect. 14 1
101 51.89 humidity 90.0 43200 < th dose independent rect. 10 1
105 51.92 humidity 90.0 43200 < th dose independent rect. 10 4
126 52.02 precipitation 0.1 43200 < th dose independent rect. 9 1
130 52.02 precipitation 0.1 43200 < th dose dependent rect. 9 1
137 52.08 humidity 90.0 14400 > th dose dependent rect. 5 1
162 52.20 temperature 25.0 43200 < th dose dependent rect. 9 1
178 52.27 humidity 90.0 14400 > th dose dependent rect. 15 15
183 52.28 humidity 90.0 14400 > th dose dependent rect. 23 11
197 52.35 wind 9.0 43200 > th dose independent rect. 18 1
200 52.36 humidity 90.0 14400 > th dose dependent sin 8 NA
206 52.38 radiation 1.0 43200 > th dose independent rect. 14 1
223 52.41 radiation 1.0 43200 < th dose independent rect. 14 1
225 52.41 radiation 1.0 43200 < th dose dependent rect. 14 1
230 52.43 precipitation 0.1 43200 > th dose independent rect. 5 1
237 52.44 temperature 20.0 43200 > th dose independent rect. 18 16
261 52.47 temperature 20.0 43200 < th dose independent rect. 18 16
271 52.49 temperature 20.0 43200 > th dose independent rect. 5 4
272 52.49 radiation 1.0 43200 < th dose independent rect. 11 4
282 52.50 radiation 1.0 43200 > th dose independent rect. 11 4
293 52.50 radiation 1.0 43200 < th dose dependent rect. 11 4
295 52.51 temperature 20.0 43200 > th dose independent rect. 4 6
301 52.51 humidity 90.0 14400 > th dose dependent rect. 2 7
335 52.54 temperature 20.0 43200 > th dose independent rect. 18 9
337 52.54 temperature 20.0 43200 > th dose independent rect. 17 12
354 52.55 temperature 20.0 43200 > th dose independent sin 13 NA
357 52.55 temperature 20.0 43200 < th dose independent rect. 17 12
376 52.56 temperature 20.0 43200 < th dose independent rect. 18 9
394 52.57 temperature 20.0 43200 < th dose independent sin 13 NA
395 52.57 temperature 20.0 43200 > th dose independent rect. 6 2
397 52.57 temperature 20.0 43200 < th dose independent rect. 5 4
399 52.57 temperature 20.0 43200 < th dose independent rect. 19 6
427 52.58 temperature 20.0 43200 < th dose independent rect. 4 6
465 52.59 temperature 30.0 43200 < th dose dependent rect. 12 1
511 52.61 temperature 20.0 43200 > th dose independent rect. 24 22
513 52.61 temperature 20.0 43200 > th dose independent rect. 7 23
519 52.62 temperature 20.0 43200 > th dose independent sin 7 NA
523 52.62 temperature 20.0 43200 > th dose independent no NA NA
559 52.63 temperature 20.0 43200 > th dose independent rect. 2 23
560 52.63 temperature 20.0 43200 > th dose independent rect. 4 23
593 52.65 temperature 20.0 43200 < th dose independent sin 7 NA
595 52.65 temperature 20.0 43200 < th dose independent rect. 6 2
603 52.65 temperature 20.0 43200 > th dose independent rect. 24 12
672 52.67 temperature 20.0 43200 < th dose independent rect. 7 23
674 52.67 temperature 20.0 43200 < th dose independent rect. 24 23
678 52.68 temperature 20.0 43200 < th dose independent no NA NA
686 52.68 radiation 1.0 43200 < th dose independent rect. 7 8
703 52.68 humidity 90.0 14400 > th dose dependent rect. 19 9
708 52.69 radiation 1.0 43200 > th dose independent rect. 7 8
712 52.69 temperature 20.0 43200 < th dose independent rect. 24 12
721 52.69 temperature 20.0 43200 < th dose independent rect. 2 23
725 52.69 humidity 90.0 14400 > th dose dependent rect. 21 6
732 52.70 radiation 30.0 43200 < th dose independent rect. 24 7
763 52.71 wind 9.0 43200 < th dose independent rect. 18 1
765 52.71 radiation 1.0 14400 > th dose independent rect. 18 1
819 52.72 radiation 1.0 43200 < th dose dependent rect. 7 1
905 52.76 atmosphere 995.0 43200 < th dose dependent rect. 16 20
931 52.78 wind 3.0 43200 > th dose independent rect. 13 1
974 52.80 radiation 1.0 43200 < th dose dependent rect. 24 5
1000 52.82 humidity 90.0 14400 > th dose independent rect. 23 1