Os12g0516300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0516300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.29 | 0.236 | 11.6 | 0.223 | 0.599 | 0.435 | -0.0804 | 0.239 | 0.071 | 20.1 | 21.3 | 909 | -- | -- |
| 25.44 | 0.235 | 11.6 | 0.174 | 0.587 | 0.41 | -0.0172 | -- | 0.065 | 20.1 | 21.39 | 832 | -- | -- |
| 25.3 | 0.234 | 11.6 | 0.224 | 0.598 | 0.436 | -- | 0.225 | 0.0714 | 20.1 | 21.3 | 901 | -- | -- |
| 25.33 | 0.234 | 11.6 | 0.188 | 0.595 | 0.389 | -- | -- | 0.0556 | 20.1 | 21.8 | 862 | -- | -- |
| 43.31 | 0.306 | 11.6 | 0.175 | -- | 0.57 | -- | 0.222 | 0.0247 | -- | 21.4 | 730 | -- | -- |
| 31.16 | 0.262 | 11.6 | 0.323 | 0.656 | -- | 0.0242 | -- | 0.173 | 20.4 | -- | -- | -- | -- |
| 31.16 | 0.261 | 11.6 | 0.323 | 0.656 | -- | -- | -- | 0.173 | 20.4 | -- | -- | -- | -- |
| 43.46 | 0.307 | 11.6 | 0.119 | -- | 0.559 | -- | -- | 0.0129 | -- | 21.34 | 714 | -- | -- |
| 26.15 | 0.238 | 11.6 | -- | 0.588 | 0.404 | -- | -- | 0.0349 | 20.3 | 21.7 | 900 | -- | -- |
| 55.09 | 0.347 | 11.5 | 0.319 | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
| 33.91 | 0.272 | 11.6 | -- | 0.654 | -- | -- | -- | 0.137 | 20.4 | -- | -- | -- | -- |
| 43.79 | 0.308 | 11.6 | -- | -- | 0.588 | -- | -- | -0.00705 | -- | 21.3 | 730 | -- | -- |
| 57.78 | 0.355 | 11.6 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 4 | 23.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 5 | 23.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 7 | 23.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 28 | 23.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 29 | 23.44 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 69 | 23.72 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 104 | 23.92 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 116 | 23.97 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 133 | 24.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 229 | 24.27 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 309 | 24.49 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 400 | 24.71 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 6 |
| 418 | 24.74 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 476 | 24.88 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 9 |
| 560 | 25.04 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 620 | 25.14 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 721 | 25.28 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 723 | 25.28 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 10 |
| 744 | 25.32 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 14 |
| 761 | 25.34 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 905 | 25.52 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 942 | 25.56 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 952 | 25.56 | radiation | 20 | 4320 | < th | dose dependent | rect. | 16 | 2 |