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Os12g0516000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.95 (0.101) R2 : 0.621
β1 : 0.801 (0.466) R2dD : 0.00394 R2D : 0.0306
β2 : -- (--) R2dC : -- R2C : --
β3 : 7.58 (0.436) R2dE : 0.258 R2E : 0.35
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 26.8 (2.14) R2dD*E : 0.216 R2D*E : 0.326
γ1 : 0.75 (0.21) R2dN8 : 0.0153 R2N8 : -0.00939
σ : 1.83
deviance : 1539.08
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C
peak time of C : --
E
wheather : radiation
threshold : 1.62
memory length : 1440
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 11.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1539.14 1.84 9.95 0.856 0.562 7.78 -0.731 27.5 0.634 7.56 1.461 1441 18 11.2
1879.35 2.02 10.2 3.09 0.155 7.37 0.455 -- 0.941 20.2 2.19 1437 17.7 11.8
1527.76 1.82 9.94 0.769 0.547 7.5 -- 27 0.73 6.57 1.497 1440 18 11.3
1813.57 1.98 10.2 4.44 0.201 7.27 -- -- 1.02 8.14 2.153 1437 17.7 11.8
1539.08 1.83 9.95 0.801 -- 7.58 -- 26.8 0.75 -- 1.62 1440 17.9 11.3
3088.13 2.61 10.2 6.02 0.329 -- -0.979 -- 1.08 9 -- -- -- --
3090.97 2.6 10.2 5.99 0.336 -- -- -- 1.09 10 -- -- -- --
1798.46 1.98 10.2 4.72 -- 6.68 -- -- 1.21 -- 2.198 1437 17.7 11.8
2309.68 2.24 10.3 -- 0.484 7.62 -- -- 0.296 6.71 3.619 1439 17.7 11.7
3097.78 2.6 10.2 5.99 -- -- -- -- 1.09 -- -- -- -- --
4037.33 2.97 10.3 -- 0.333 -- -- -- 0.419 8.68 -- -- -- --
2317.08 2.24 10.4 -- -- 7.44 -- -- 0.29 -- 3.6 1438 17.7 11.8
4043.59 2.97 10.3 -- -- -- -- -- 0.422 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1513.24 wind 9.0 43200 > th dose dependent rect. 19 11
7 1575.27 wind 9.0 43200 > th dose independent rect. 19 12
10 1592.12 wind 5.0 43200 > th dose independent rect. 6 1
11 1593.44 wind 5.0 43200 < th dose independent rect. 6 1
14 1601.38 radiation 1.0 1440 < th dose dependent rect. 18 11
16 1604.72 humidity 70.0 14400 < th dose dependent rect. 18 1
17 1606.77 wind 5.0 43200 > th dose dependent rect. 6 1
18 1606.85 precipitation 0.1 43200 > th dose dependent rect. 16 2
22 1609.47 radiation 1.0 1440 < th dose dependent rect. 18 7
23 1609.74 wind 9.0 43200 < th dose independent rect. 19 12
25 1610.72 precipitation 0.1 43200 > th dose dependent rect. 17 4
26 1612.04 radiation 1.0 1440 < th dose dependent rect. 18 1
30 1614.29 radiation 20.0 4320 < th dose independent rect. 15 17
31 1614.40 wind 9.0 43200 > th dose dependent rect. 19 6
42 1620.19 precipitation 0.1 43200 > th dose independent rect. 17 1
43 1620.52 precipitation 0.1 43200 < th dose independent rect. 17 1
44 1620.52 precipitation 0.1 43200 < th dose dependent rect. 17 1
47 1624.60 radiation 10.0 14400 > th dose dependent rect. 17 1
59 1624.98 temperature 25.0 1440 > th dose dependent rect. 7 13
79 1628.78 temperature 25.0 1440 > th dose dependent sin 2 NA
94 1631.51 temperature 25.0 1440 > th dose dependent rect. 16 22
116 1633.85 temperature 25.0 1440 > th dose dependent rect. 8 1
138 1635.91 temperature 25.0 1440 > th dose dependent rect. 7 7
161 1638.42 radiation 20.0 4320 > th dose dependent rect. 15 17
167 1638.64 wind 9.0 43200 > th dose independent rect. 19 6
182 1639.95 temperature 25.0 4320 < th dose independent rect. 7 1
213 1642.28 temperature 25.0 1440 > th dose dependent no NA NA
252 1648.08 wind 3.0 43200 > th dose dependent rect. 3 12
259 1648.66 wind 9.0 43200 < th dose independent rect. 19 2
273 1650.98 temperature 25.0 4320 > th dose independent rect. 7 1
281 1652.25 temperature 25.0 1440 > th dose dependent rect. 18 1
287 1653.03 humidity 60.0 14400 < th dose independent rect. 17 2
312 1657.84 radiation 1.0 43200 < th dose dependent rect. 19 5
330 1659.31 radiation 10.0 1440 < th dose dependent rect. 17 13
339 1661.36 wind 9.0 43200 > th dose independent rect. 19 2
345 1662.53 temperature 25.0 1440 > th dose dependent rect. 4 6
367 1666.84 atmosphere 1000.0 43200 < th dose dependent rect. 14 1
370 1667.64 wind 5.0 43200 > th dose independent rect. 3 13
372 1667.77 humidity 80.0 14400 > th dose independent rect. 17 3
375 1668.14 wind 5.0 43200 < th dose independent rect. 3 13
378 1668.43 wind 3.0 43200 > th dose dependent sin 4 NA
379 1668.46 humidity 60.0 14400 < th dose dependent rect. 16 16
393 1670.35 humidity 60.0 14400 < th dose dependent rect. 16 6
422 1671.99 atmosphere 1000.0 43200 < th dose dependent rect. 11 4
424 1672.10 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
447 1675.31 wind 9.0 43200 < th dose independent rect. 19 6
465 1677.31 precipitation 0.1 43200 > th dose dependent rect. 19 2
471 1677.97 temperature 20.0 14400 > th dose dependent rect. 17 1
476 1678.75 radiation 10.0 14400 < th dose dependent rect. 18 1
480 1679.17 atmosphere 1000.0 43200 < th dose independent rect. 11 1
481 1679.22 atmosphere 1000.0 43200 > th dose independent rect. 11 1
493 1679.49 humidity 90.0 43200 < th dose independent rect. 10 1
505 1681.11 wind 5.0 43200 > th dose dependent rect. 19 21
510 1681.80 radiation 1.0 1440 > th dose dependent rect. 17 13
536 1684.16 wind 5.0 43200 < th dose independent sin 3 NA
542 1685.04 humidity 80.0 14400 > th dose independent rect. 17 1
556 1685.95 temperature 30.0 1440 < th dose independent rect. 10 6
569 1686.70 humidity 60.0 14400 < th dose independent rect. 17 15
577 1687.54 humidity 90.0 43200 > th dose independent rect. 9 2
594 1688.65 wind 5.0 43200 < th dose independent rect. 19 21
595 1688.70 wind 5.0 43200 > th dose independent sin 3 NA
605 1689.59 temperature 30.0 14400 > th dose independent rect. 15 1
608 1689.99 radiation 10.0 14400 < th dose dependent rect. 18 9
628 1691.44 temperature 30.0 1440 < th dose independent rect. 2 14
631 1691.55 temperature 30.0 14400 < th dose independent rect. 15 1
639 1691.76 temperature 30.0 1440 < th dose independent rect. 6 10
640 1691.76 temperature 30.0 1440 < th dose independent rect. 21 19
645 1691.89 temperature 30.0 1440 < th dose independent rect. 23 17
689 1694.12 wind 5.0 43200 > th dose independent rect. 19 21
695 1694.46 humidity 60.0 14400 < th dose independent rect. 17 5
732 1696.47 radiation 30.0 14400 > th dose independent rect. 16 16
742 1697.28 temperature 30.0 14400 < th dose independent rect. 14 13
743 1697.29 temperature 30.0 14400 < th dose independent rect. 14 18
744 1697.30 temperature 30.0 14400 < th dose independent rect. 14 15
747 1697.34 temperature 30.0 14400 < th dose independent rect. 14 11
753 1697.44 temperature 30.0 14400 < th dose independent rect. 14 5
764 1698.02 temperature 30.0 1440 < th dose independent sin 0 NA
785 1698.52 humidity 80.0 14400 < th dose independent rect. 17 3
811 1699.34 wind 1.0 43200 > th dose dependent rect. 8 2
820 1699.69 temperature 30.0 14400 > th dose independent rect. 14 5
852 1700.69 wind 9.0 43200 < th dose dependent rect. 8 2
869 1701.53 temperature 30.0 1440 < th dose independent rect. 10 22
871 1701.62 temperature 30.0 1440 < th dose independent rect. 10 14
872 1701.63 temperature 30.0 1440 < th dose independent rect. 10 12
879 1701.79 temperature 30.0 1440 < th dose independent rect. 10 19
916 1702.88 radiation 1.0 14400 < th dose independent rect. 18 9
929 1703.39 radiation 1.0 14400 < th dose independent rect. 18 7
943 1703.91 humidity 60.0 14400 > th dose independent rect. 17 2
948 1703.98 radiation 1.0 14400 < th dose independent rect. 18 1
990 1705.14 radiation 30.0 14400 > th dose independent rect. 7 1