Os12g0515800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os12g0515800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 363.35 | 0.896 | 15 | 1.79 | 0.342 | -1.69 | 0.757 | 6.17 | 0.846 | 22.5 | 30.4 | 1366 | -- | -- |
| 364.82 | 0.89 | 15.1 | 0.74 | 0.311 | -0.99 | 0.707 | -- | 0.849 | 22.4 | 29.5 | 1366 | -- | -- |
| 365.55 | 0.89 | 15 | 1.85 | 0.338 | -1.74 | -- | 6.74 | 0.847 | 22 | 30.6 | 1366 | -- | -- |
| 367.02 | 0.892 | 15.1 | 0.7 | 0.303 | -0.985 | -- | -- | 0.855 | 22.1 | 29.6 | 1401 | -- | -- |
| 372.45 | 0.899 | 15 | 1.81 | -- | -1.73 | -- | 6.68 | 0.856 | -- | 30.71 | 1460 | -- | -- |
| 414.19 | 0.954 | 15.1 | 0.428 | 0.275 | -- | 0.595 | -- | 1.05 | 21.3 | -- | -- | -- | -- |
| 415.34 | 0.954 | 15.1 | 0.409 | 0.281 | -- | -- | -- | 1.05 | 20.6 | -- | -- | -- | -- |
| 373.21 | 0.9 | 15.1 | 0.679 | -- | -0.945 | -- | -- | 0.861 | -- | 29.51 | 1429 | -- | -- |
| 378.91 | 0.907 | 15.1 | -- | 0.328 | -0.881 | -- | -- | 0.797 | 22.1 | 29.9 | 1366 | -- | -- |
| 419.79 | 0.957 | 15.1 | 0.408 | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
| 419.75 | 0.958 | 15.1 | -- | 0.28 | -- | -- | -- | 1 | 20.7 | -- | -- | -- | -- |
| 385.14 | 0.914 | 15.1 | -- | -- | -0.855 | -- | -- | 0.799 | -- | 29.9 | 1431 | -- | -- |
| 424.19 | 0.961 | 15.1 | -- | -- | -- | -- | -- | 0.998 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 350.21 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 7 | 351.01 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 9 | 351.20 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 13 | 351.52 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 39 | 351.98 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 40 | 351.98 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 43 | 352.01 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 55 | 352.14 | wind | 7 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 68 | 352.26 | wind | 7 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 78 | 352.34 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 79 | 352.35 | wind | 9 | 43200 | > th | dose independent | sin | 12 | NA |
| 91 | 352.45 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 21 |
| 96 | 352.50 | wind | 5 | 43200 | > th | dose dependent | rect. | 1 | 16 |
| 97 | 352.54 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 99 | 352.55 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 14 |
| 107 | 352.61 | wind | 9 | 43200 | < th | dose independent | sin | 12 | NA |
| 110 | 352.64 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 147 | 352.94 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 192 | 353.28 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 193 | 353.28 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 196 | 353.29 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 198 | 353.30 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 204 | 353.33 | wind | 7 | 43200 | < th | dose independent | sin | 3 | NA |
| 207 | 353.35 | wind | 7 | 43200 | > th | dose independent | sin | 3 | NA |
| 211 | 353.38 | wind | 5 | 43200 | > th | dose dependent | sin | 2 | NA |
| 224 | 353.47 | wind | 5 | 43200 | < th | dose independent | sin | 12 | NA |
| 228 | 353.49 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 229 | 353.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 234 | 353.51 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 260 | 353.58 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 279 | 353.65 | wind | 7 | 43200 | > th | dose dependent | sin | 12 | NA |
| 360 | 354.01 | wind | 5 | 43200 | > th | dose independent | sin | 12 | NA |
| 437 | 354.26 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 618 | 354.81 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 667 | 354.93 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 679 | 354.96 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 694 | 355.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 746 | 355.14 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 793 | 355.30 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 868 | 355.51 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 928 | 355.69 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 17 |
| 964 | 355.77 | wind | 9 | 43200 | > th | dose dependent | sin | 18 | NA |
| 989 | 355.85 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 16 |