Os12g0513800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0513800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 211.19 | 0.683 | 9.29 | -0.5 | 0.49 | 1 | -0.412 | -0.251 | -0.854 | 20.4 | 40.79 | 630 | -- | -- |
| 211.27 | 0.677 | 9.29 | -0.479 | 0.49 | 0.989 | -0.441 | -- | -0.846 | 20.4 | 40.79 | 630 | -- | -- |
| 211.67 | 0.678 | 9.3 | -0.493 | 0.505 | 0.979 | -- | -0.388 | -0.854 | 20.2 | 40.81 | 630 | -- | -- |
| 211.88 | 0.678 | 9.29 | -0.459 | 0.504 | 0.956 | -- | -- | -0.841 | 20.2 | 40.82 | 628 | -- | -- |
| 222.07 | 0.694 | 9.29 | -0.527 | -- | 1.24 | -- | -0.338 | -0.901 | -- | 40.56 | 667 | -- | -- |
| 231.86 | 0.714 | 9.27 | -0.341 | 1.03 | -- | 0.0783 | -- | -0.687 | 18.8 | -- | -- | -- | -- |
| 231.87 | 0.713 | 9.27 | -0.342 | 1.03 | -- | -- | -- | -0.687 | 18.8 | -- | -- | -- | -- |
| 222.38 | 0.695 | 9.29 | -0.503 | -- | 1.23 | -- | -- | -0.904 | -- | 40.54 | 668 | -- | -- |
| 216.73 | 0.686 | 9.29 | -- | 0.55 | 0.858 | -- | -- | -0.789 | 20 | 39.21 | 613 | -- | -- |
| 287.43 | 0.792 | 9.25 | -0.365 | -- | -- | -- | -- | -0.707 | -- | -- | -- | -- | -- |
| 234.96 | 0.717 | 9.26 | -- | 1.03 | -- | -- | -- | -0.649 | 18.8 | -- | -- | -- | -- |
| 227.48 | 0.702 | 9.27 | -- | -- | 1.18 | -- | -- | -0.801 | -- | 39.21 | 633 | -- | -- |
| 290.94 | 0.796 | 9.24 | -- | -- | -- | -- | -- | -0.667 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 5 | 202.48 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 15 |
| 8 | 203.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 12 | 203.83 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 10 |
| 17 | 204.09 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 10 |
| 20 | 204.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 21 | 204.54 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 15 |
| 22 | 204.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 50 | 205.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 86 | 206.60 | temperature | 25 | 90 | > th | dose independent | sin | 5 | NA |
| 122 | 207.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 125 | 207.41 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 18 |
| 132 | 207.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 133 | 207.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 196 | 208.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 233 | 208.70 | temperature | 25 | 90 | < th | dose independent | sin | 5 | NA |
| 242 | 208.89 | temperature | 20 | 10 | > th | dose dependent | sin | 4 | NA |
| 266 | 209.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 14 |
| 270 | 209.13 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 306 | 209.48 | radiation | 40 | 270 | < th | dose independent | rect. | 19 | 19 |
| 309 | 209.51 | radiation | 10 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 345 | 209.79 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 397 | 210.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 412 | 210.28 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 423 | 210.35 | radiation | 10 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 454 | 210.59 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 470 | 210.69 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 494 | 210.86 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 509 | 210.96 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 524 | 211.06 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 553 | 211.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 626 | 211.68 | wind | 7 | 270 | < th | dose independent | rect. | 14 | 14 |
| 632 | 211.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 716 | 212.15 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 14 |
| 741 | 212.26 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 742 | 212.26 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 749 | 212.29 | radiation | 30 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 752 | 212.31 | humidity | 50 | 270 | > th | dose independent | rect. | 10 | 14 |
| 753 | 212.31 | radiation | 30 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 783 | 212.43 | radiation | 40 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 807 | 212.46 | wind | 7 | 270 | < th | dose independent | rect. | 13 | 6 |
| 815 | 212.49 | radiation | 40 | 720 | < th | dose independent | rect. | 4 | 10 |
| 874 | 212.69 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 7 |
| 897 | 212.77 | radiation | 40 | 720 | > th | dose independent | rect. | 14 | 22 |
| 916 | 212.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 919 | 212.89 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 924 | 212.90 | wind | 1 | 270 | > th | dose independent | rect. | 24 | 19 |
| 987 | 213.13 | wind | 9 | 270 | < th | dose independent | rect. | 24 | 19 |
| 998 | 213.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 1000 | 213.17 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 7 |