Os12g0511500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0511500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.45 | 0.478 | 6.11 | -0.0779 | 0.662 | -0.408 | 0.029 | -0.662 | 0.0075 | 4.68 | 50 | 4258 | -- | -- |
| 103.88 | 0.475 | 6.08 | -0.0538 | 0.649 | -0.563 | -0.000184 | -- | -0.00691 | 4.68 | 50 | 4281 | -- | -- |
| 103.45 | 0.474 | 6.11 | -0.0782 | 0.662 | -0.409 | -- | -0.66 | 0.00756 | 4.67 | 49.97 | 4257 | -- | -- |
| 103.82 | 0.475 | 6.09 | -0.0388 | 0.675 | -0.587 | -- | -- | -0.0154 | 4.68 | 50 | 4262 | -- | -- |
| 125.15 | 0.521 | 6.13 | -0.15 | -- | -0.259 | -- | -1.3 | 0.012 | -- | 49.95 | 3626 | -- | -- |
| 111.11 | 0.494 | 6.08 | -0.278 | 0.647 | -- | -0.0413 | -- | 0.059 | 4.81 | -- | -- | -- | -- |
| 111.11 | 0.494 | 6.08 | -0.277 | 0.646 | -- | -- | -- | 0.0592 | 4.82 | -- | -- | -- | -- |
| 126.55 | 0.524 | 6.1 | -0.0905 | -- | -0.596 | -- | -- | -0.0176 | -- | 48 | 3435 | -- | -- |
| 103.74 | 0.474 | 6.09 | -- | 0.668 | -0.632 | -- | -- | -0.00757 | 4.63 | 49.06 | 4279 | -- | -- |
| 133.19 | 0.539 | 6.08 | -0.253 | -- | -- | -- | -- | 0.076 | -- | -- | -- | -- | -- |
| 113.14 | 0.498 | 6.07 | -- | 0.641 | -- | -- | -- | 0.0901 | 4.83 | -- | -- | -- | -- |
| 126.31 | 0.523 | 6.1 | -- | -- | -0.686 | -- | -- | 0.0335 | -- | 48.9 | 3628 | -- | -- |
| 134.88 | 0.542 | 6.08 | -- | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.97 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 2 | 100.97 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 3 | 101.06 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 10 |
| 5 | 101.18 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 15 |
| 6 | 101.18 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 10 | 101.37 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 11 | 101.38 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 12 | 101.46 | humidity | 50.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 14 | 101.50 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 16 | 101.56 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 18 | 101.59 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 19 | 101.64 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 15 | 20 |
| 21 | 101.66 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 43 | 101.79 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 44 | 101.80 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 47 | 101.85 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 48 | 101.87 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 2 | 2 |
| 50 | 101.91 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 52 | 101.92 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 55 | 101.96 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 56 | 101.96 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 83 | 102.06 | humidity | 50.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 97 | 102.18 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 98 | 102.18 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 8 |
| 100 | 102.19 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 5 |
| 103 | 102.20 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 106 | 102.20 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 13 |
| 107 | 102.21 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 111 | 102.22 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 116 | 102.23 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 118 | 102.23 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 11 |
| 119 | 102.24 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 121 | 102.25 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 124 | 102.27 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 14 |
| 140 | 102.33 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 2 | 11 |
| 142 | 102.34 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 149 | 102.36 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 151 | 102.36 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 2 | 9 |
| 182 | 102.40 | radiation | 20.0 | 30 | < th | dose independent | rect. | 13 | 17 |
| 196 | 102.43 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 199 | 102.43 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 2 | 11 |
| 200 | 102.44 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 203 | 102.44 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 20 |
| 212 | 102.46 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 2 | 9 |
| 240 | 102.50 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 251 | 102.53 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 262 | 102.55 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 274 | 102.57 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 324 | 102.71 | humidity | 90.0 | 30 | < th | dose independent | rect. | 18 | 22 |
| 389 | 102.87 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 430 | 102.92 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 433 | 102.93 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 434 | 102.93 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 466 | 103.03 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 15 | 15 |
| 468 | 103.05 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 481 | 103.07 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 485 | 103.07 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 512 | 103.12 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 517 | 103.12 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 540 | 103.17 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 541 | 103.17 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 545 | 103.17 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 546 | 103.17 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 548 | 103.17 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 10 |
| 564 | 103.20 | temperature | 15.0 | 10 | > th | dose independent | rect. | 18 | 8 |
| 575 | 103.22 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 586 | 103.25 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 587 | 103.25 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 21 |
| 598 | 103.28 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 609 | 103.30 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 15 | 21 |
| 610 | 103.31 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 6 |
| 613 | 103.31 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 616 | 103.32 | temperature | 15.0 | 90 | > th | dose independent | rect. | 20 | 19 |
| 643 | 103.38 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 680 | 103.40 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 723 | 103.43 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 10 | 3 |
| 737 | 103.48 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 10 |
| 751 | 103.49 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 777 | 103.53 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 779 | 103.53 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 10 |
| 782 | 103.54 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 790 | 103.55 | temperature | 15.0 | 90 | > th | dose independent | rect. | 6 | 9 |
| 808 | 103.56 | humidity | 50.0 | 4320 | < th | dose independent | no | NA | NA |
| 938 | 103.57 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 4 | NA |
| 941 | 103.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 954 | 103.60 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 970 | 103.62 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 972 | 103.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 974 | 103.62 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 976 | 103.62 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 981 | 103.63 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 983 | 103.63 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 1 | 17 |