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Os12g0511400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0155) R2 : 0.0441
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.15 (0.0326) R2dN8 : 0.0569 R2N8 : 0.0441
σ : 0.292
deviance : 39.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.5 0.191 10.6 0.452 0.499 0.759 0.0638 1.41 0.242 2.27 0.7001 1389 -- --
17.93 0.197 10.6 0.633 0.522 0.656 -0.044 -- 0.279 1.9 0.7755 1349 -- --
16.34 0.188 10.6 0.489 0.515 0.867 -- 1.46 0.243 1.94 0.54 1363 -- --
17.83 0.197 10.6 0.64 0.51 0.661 -- -- 0.284 1.74 0.73 1327 -- --
19.65 0.206 10.6 0.602 -- 1.09 -- 1.21 0.319 -- 0.6585 1709 -- --
21.66 0.218 10.6 0.49 0.426 -- -0.162 -- 0.194 2.93 -- -- -- --
21.75 0.218 10.6 0.494 0.425 -- -- -- 0.195 2.94 -- -- -- --
17.9 0.197 10.6 0.609 -- 0.845 -- -- 0.258 -- 0.7399 1807 -- --
27.47 0.244 10.6 -- 0.512 0.593 -- -- 0.286 1.72 1.626 1310 -- --
32.15 0.265 10.6 0.512 -- -- -- -- 0.206 -- -- -- -- --
28.17 0.248 10.6 -- 0.435 -- -- -- 0.14 2.94 -- -- -- --
26.67 0.241 10.6 -- -- 0.739 -- -- 0.209 -- 1.58 1848 -- --
39.05 0.292 10.6 -- -- -- -- -- 0.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.35 radiation 1.0 720 < th dose dependent rect. 4 14
4 16.60 radiation 1.0 1440 < th dose dependent sin 1 NA
5 16.60 precipitation 0.1 43200 > th dose dependent rect. 19 1
6 16.61 humidity 80.0 1440 > th dose independent rect. 11 1
7 16.64 humidity 80.0 1440 < th dose independent rect. 11 1
8 16.64 radiation 1.0 720 < th dose dependent rect. 5 20
22 16.72 precipitation 0.1 14400 > th dose dependent rect. 11 3
23 16.73 precipitation 0.1 14400 > th dose dependent rect. 13 1
25 16.77 radiation 1.0 720 < th dose independent rect. 4 14
27 16.79 precipitation 0.1 14400 < th dose independent rect. 13 1
28 16.79 precipitation 0.1 14400 < th dose dependent rect. 13 1
29 16.82 precipitation 0.1 14400 > th dose independent rect. 13 1
46 16.88 radiation 1.0 720 < th dose independent rect. 5 12
86 16.93 radiation 1.0 1440 < th dose dependent rect. 11 21
109 16.94 radiation 1.0 1440 < th dose dependent no NA NA
130 16.98 radiation 1.0 1440 < th dose dependent rect. 16 23
140 17.03 precipitation 0.1 14400 < th dose independent rect. 13 3
141 17.03 precipitation 0.1 14400 < th dose dependent rect. 13 3
149 17.07 precipitation 0.1 43200 < th dose independent rect. 19 1
151 17.07 precipitation 0.1 43200 < th dose dependent rect. 19 1
154 17.08 precipitation 0.1 43200 > th dose independent rect. 19 1
156 17.08 radiation 1.0 720 < th dose independent rect. 5 20
173 17.12 radiation 1.0 720 < th dose independent rect. 5 18
200 17.23 precipitation 0.1 4320 > th dose dependent rect. 4 10
201 17.24 radiation 1.0 1440 < th dose independent sin 1 NA
202 17.24 precipitation 0.1 4320 > th dose dependent rect. 2 15
206 17.25 radiation 1.0 1440 > th dose independent sin 1 NA
207 17.25 humidity 70.0 1440 > th dose dependent rect. 11 1
213 17.27 wind 1.0 14400 < th dose independent rect. 19 11
221 17.29 humidity 80.0 14400 > th dose independent rect. 14 2
222 17.29 humidity 80.0 14400 > th dose independent rect. 13 5
224 17.30 radiation 1.0 1440 > th dose independent rect. 5 12
234 17.31 precipitation 0.1 4320 > th dose dependent rect. 23 18
235 17.32 humidity 80.0 43200 < th dose independent rect. 6 1
236 17.32 wind 1.0 14400 > th dose independent rect. 19 11
255 17.33 precipitation 0.1 4320 > th dose dependent rect. 6 8
256 17.34 humidity 80.0 1440 < th dose independent rect. 9 5
258 17.34 precipitation 0.1 4320 > th dose dependent rect. 2 12
260 17.35 precipitation 0.1 1440 > th dose independent rect. 4 10
261 17.35 precipitation 0.1 14400 > th dose dependent rect. 5 1
288 17.38 precipitation 0.1 4320 > th dose independent rect. 2 15
289 17.38 precipitation 0.1 4320 < th dose independent rect. 2 15
291 17.38 precipitation 0.1 4320 < th dose dependent rect. 2 15
292 17.38 humidity 70.0 270 > th dose dependent rect. 9 22
293 17.39 precipitation 0.1 14400 > th dose independent rect. 5 1
303 17.39 precipitation 0.1 14400 > th dose dependent rect. 4 4
342 17.42 precipitation 0.1 1440 < th dose independent rect. 4 10
343 17.42 precipitation 0.1 1440 < th dose dependent rect. 4 10
350 17.43 humidity 70.0 14400 > th dose dependent rect. 14 1
352 17.44 humidity 80.0 14400 < th dose independent rect. 14 1
357 17.44 radiation 1.0 1440 < th dose dependent sin 12 NA
370 17.45 humidity 80.0 43200 < th dose independent rect. 5 3
374 17.45 radiation 1.0 1440 < th dose independent rect. 11 21
377 17.46 humidity 80.0 14400 < th dose independent rect. 14 3
380 17.46 radiation 1.0 1440 < th dose independent rect. 16 23
383 17.46 humidity 70.0 90 > th dose dependent rect. 19 23
386 17.47 radiation 1.0 1440 > th dose independent rect. 11 21
388 17.47 radiation 1.0 1440 > th dose independent rect. 16 23
393 17.47 humidity 70.0 90 > th dose dependent rect. 17 23
395 17.48 humidity 80.0 43200 > th dose independent rect. 6 1
396 17.48 precipitation 0.1 14400 < th dose independent rect. 5 1
398 17.48 precipitation 0.1 14400 > th dose independent rect. 4 4
412 17.48 precipitation 0.1 14400 < th dose dependent rect. 5 1
418 17.49 wind 1.0 43200 < th dose independent rect. 1 2
419 17.49 humidity 80.0 14400 < th dose independent rect. 13 5
435 17.49 precipitation 0.1 4320 > th dose dependent sin 4 NA
438 17.50 humidity 80.0 1440 > th dose independent rect. 10 4
440 17.50 humidity 80.0 1440 > th dose independent rect. 9 6
491 17.50 humidity 70.0 90 > th dose dependent no NA NA
497 17.51 radiation 1.0 1440 < th dose independent no NA NA
498 17.51 precipitation 0.1 4320 > th dose independent sin 3 NA
499 17.51 wind 1.0 43200 > th dose independent rect. 1 1
520 17.52 radiation 1.0 1440 > th dose independent no NA NA
521 17.52 precipitation 0.1 4320 < th dose independent sin 3 NA
580 17.52 precipitation 0.1 4320 < th dose dependent sin 3 NA
589 17.53 humidity 80.0 1440 < th dose independent sin 1 NA
591 17.53 precipitation 0.1 14400 > th dose independent rect. 13 7
598 17.53 precipitation 0.1 4320 > th dose dependent rect. 6 11
604 17.53 humidity 70.0 90 > th dose dependent rect. 13 23
606 17.54 precipitation 0.1 14400 < th dose independent rect. 13 7
611 17.54 precipitation 0.1 14400 < th dose dependent rect. 13 7
621 17.54 humidity 70.0 90 > th dose dependent rect. 21 23
648 17.57 precipitation 0.1 14400 < th dose independent rect. 4 4
656 17.57 precipitation 0.1 14400 < th dose dependent rect. 4 4
678 17.58 humidity 70.0 90 > th dose dependent rect. 15 23
692 17.59 radiation 1.0 1440 < th dose dependent rect. 11 8
720 17.60 temperature 25.0 270 > th dose dependent rect. 16 21
721 17.60 precipitation 0.1 4320 > th dose dependent rect. 19 22
723 17.61 humidity 80.0 1440 > th dose independent sin 1 NA
725 17.61 humidity 90.0 43200 > th dose independent rect. 21 1
730 17.61 humidity 80.0 1440 < th dose independent rect. 8 12
759 17.62 precipitation 0.1 1440 > th dose dependent rect. 5 4
816 17.64 precipitation 0.1 1440 > th dose independent rect. 5 4
827 17.64 humidity 70.0 1440 > th dose dependent rect. 10 3
874 17.65 humidity 70.0 90 > th dose dependent rect. 3 23
918 17.67 humidity 80.0 270 > th dose independent rect. 9 22
936 17.68 humidity 90.0 43200 < th dose independent rect. 21 1
942 17.68 precipitation 0.1 14400 > th dose independent rect. 13 11
943 17.68 precipitation 0.1 14400 < th dose independent rect. 13 11
960 17.68 humidity 80.0 1440 > th dose dependent rect. 9 5
961 17.68 humidity 80.0 1440 > th dose dependent rect. 8 7
962 17.68 precipitation 0.1 14400 < th dose dependent rect. 13 11
968 17.68 humidity 70.0 720 > th dose dependent rect. 3 19