Os12g0511000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0511000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.55 | 0.416 | 11.3 | -1.8 | 1.57 | -0.456 | -0.455 | 1.59 | -0.547 | 6.99 | 19.98 | 1441 | -- | -- |
| 84.67 | 0.429 | 11.3 | -1.69 | 1.55 | -0.427 | -0.22 | -- | -0.507 | 7.04 | 29.96 | 1371 | -- | -- |
| 79.04 | 0.414 | 11.3 | -1.8 | 1.57 | -0.455 | -- | 1.58 | -0.547 | 6.99 | 19.98 | 1446 | -- | -- |
| 84.8 | 0.429 | 11.3 | -1.73 | 1.58 | -0.452 | -- | -- | -0.5 | 7.12 | 29.77 | 1299 | -- | -- |
| 207.79 | 0.675 | 11.3 | -1.58 | -- | -0.373 | -- | 0.683 | -0.363 | -- | 19.97 | 1502 | -- | -- |
| 91.29 | 0.448 | 11.2 | -1.65 | 1.57 | -- | -0.438 | -- | -0.407 | 6.96 | -- | -- | -- | -- |
| 91.78 | 0.449 | 11.2 | -1.65 | 1.57 | -- | -- | -- | -0.406 | 6.94 | -- | -- | -- | -- |
| 210.28 | 0.678 | 11.3 | -1.62 | -- | -0.368 | -- | -- | -0.368 | -- | 19.97 | 1502 | -- | -- |
| 106.02 | 0.48 | 11.1 | -- | 1.5 | -1.44 | -- | -- | -0.0695 | 6.37 | 79.78 | 7195 | -- | -- |
| 221.05 | 0.695 | 11.3 | -1.62 | -- | -- | -- | -- | -0.377 | -- | -- | -- | -- | -- |
| 163.92 | 0.599 | 11.2 | -- | 1.55 | -- | -- | -- | -0.222 | 7.01 | -- | -- | -- | -- |
| 226.82 | 0.701 | 11.2 | -- | -- | -1.74 | -- | -- | -0.0338 | -- | 74.49 | 7241 | -- | -- |
| 290.42 | 0.795 | 11.2 | -- | -- | -- | -- | -- | -0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.63 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 15 |
| 3 | 71.98 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 4 | 72.04 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 16 | NA |
| 8 | 72.37 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 11 | 72.71 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 15 | 72.78 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 19 |
| 23 | 73.08 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 34 | 73.44 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 9 |
| 60 | 74.03 | atmosphere | 995 | 43200 | > th | dose independent | sin | 5 | NA |
| 67 | 74.34 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 92 | 74.83 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 22 |
| 96 | 74.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 98 | 74.84 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 20 |
| 102 | 74.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 103 | 74.85 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 109 | 74.85 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 112 | 74.88 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 17 |
| 136 | 75.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 139 | 75.02 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 140 | 75.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 141 | 75.04 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 13 |
| 145 | 75.05 | atmosphere | 995 | 43200 | < th | dose independent | sin | 5 | NA |
| 161 | 75.13 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 18 |
| 162 | 75.13 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 6 | 20 |
| 166 | 75.15 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 188 | 75.21 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 199 | 75.27 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 206 | 75.31 | atmosphere | 995 | 43200 | < th | dose independent | no | NA | NA |
| 245 | 75.51 | atmosphere | 995 | 43200 | < th | dose independent | sin | 19 | NA |
| 255 | 75.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 258 | 75.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 265 | 75.58 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 272 | 75.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 285 | 75.75 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 289 | 75.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 293 | 75.77 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 294 | 75.78 | atmosphere | 995 | 43200 | > th | dose independent | sin | 19 | NA |
| 319 | 75.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 382 | 76.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 385 | 76.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 393 | 76.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 404 | 76.23 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 410 | 76.26 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 475 | 76.46 | atmosphere | 995 | 43200 | > th | dose independent | no | NA | NA |
| 505 | 76.57 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 527 | 76.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 535 | 76.68 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 542 | 76.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 543 | 76.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 547 | 76.76 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 552 | 76.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 591 | 76.90 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 600 | 76.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 610 | 76.93 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 684 | 77.23 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 739 | 77.39 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 780 | 77.48 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 797 | 77.53 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 839 | 77.63 | radiation | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 874 | 77.70 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 906 | 77.77 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 977 | 77.89 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 23 |