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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0510500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.14 (0.0375) R2 : 0.462
β1 : -1.95 (0.139) R2dD : 0.253 R2D : 0.173
β2 : 1.14 (0.0895) R2dC : 0.194 R2C : 0.209
β3 : 0.739 (0.11) R2dE : 0.0612 R2E : 0.0255
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.118 (0.0819) R2dN8 : 0.00344 R2N8 : -0.00113
σ : 0.695
deviance : 222.97
__
_____
C
peak time of C : 22.7
E
wheather : temperature
threshold : 30.1
memory length : 2696
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.45 0.696 4.11 -1.3 1.11 0.571 -0.89 2.75 -0.197 23 22.81 2035 -- --
220.91 0.692 4.13 -2.01 1.09 0.766 -1.17 -- -0.106 22.7 29.5 2666 -- --
222.32 0.694 4.12 -1.36 1.15 0.641 -- 2.41 -0.241 22.9 21.3 1801 -- --
222.97 0.695 4.14 -1.95 1.14 0.739 -- -- -0.118 22.7 30.1 2696 -- --
282.99 0.783 4.11 -1.49 -- 1.15 -- 2.64 -0.292 -- 22.44 824 -- --
242.94 0.731 4.17 -1.79 1.2 -- -0.706 -- -0.257 22.8 -- -- -- --
245.04 0.733 4.17 -1.77 1.2 -- -- -- -0.255 22.8 -- -- -- --
281.34 0.781 4.2 -2.19 -- 1.47 -- -- -0.529 -- 19.73 811 -- --
319.76 0.833 4.11 -- 1.14 0.438 -- -- 0.0128 22.7 30.4 3797 -- --
334.51 0.855 4.14 -1.74 -- -- -- -- -0.247 -- -- -- -- --
327.17 0.846 4.12 -- 1.19 -- -- -- -0.0584 22.7 -- -- -- --
389.92 0.92 4.12 -- -- 0.925 -- -- -0.157 -- 24.21 827 -- --
414.38 0.95 4.09 -- -- -- -- -- -0.0541 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 210.51 radiation 40 4320 < th dose dependent rect. 21 9
2 210.67 radiation 10 4320 < th dose dependent rect. 18 12
4 210.87 radiation 1 4320 > th dose dependent rect. 18 12
26 211.44 radiation 10 4320 < th dose dependent rect. 2 4
27 211.47 atmosphere 995 43200 > th dose independent rect. 24 16
31 211.56 radiation 1 4320 > th dose dependent rect. 4 2
41 211.58 atmosphere 995 43200 < th dose independent rect. 24 16
43 211.65 humidity 50 14400 < th dose dependent rect. 16 1
60 212.02 atmosphere 995 43200 > th dose independent rect. 2 13
68 212.36 temperature 15 270 > th dose dependent rect. 15 15
70 212.38 temperature 20 10 > th dose independent rect. 16 14
71 212.42 atmosphere 995 43200 > th dose independent rect. 23 22
81 212.56 atmosphere 995 43200 < th dose independent rect. 3 12
86 212.65 atmosphere 995 43200 > th dose independent sin 4 NA
91 212.72 humidity 50 14400 < th dose dependent rect. 16 18
111 212.92 atmosphere 995 43200 < th dose independent rect. 8 20
120 212.97 humidity 50 14400 > th dose independent rect. 16 1
122 212.97 atmosphere 995 43200 < th dose independent rect. 7 22
125 212.98 atmosphere 995 43200 > th dose independent rect. 4 22
126 212.98 atmosphere 995 43200 > th dose independent rect. 7 22
134 213.03 atmosphere 995 43200 > th dose independent rect. 8 20
143 213.13 humidity 50 14400 < th dose independent rect. 16 1
146 213.15 atmosphere 995 43200 < th dose independent rect. 9 18
149 213.21 atmosphere 995 43200 < th dose independent sin 4 NA
158 213.32 atmosphere 1005 43200 < th dose dependent rect. 9 1
159 213.37 temperature 25 4320 > th dose independent rect. 21 1
160 213.37 atmosphere 1000 43200 < th dose dependent sin 4 NA
161 213.37 atmosphere 1000 43200 < th dose dependent rect. 4 7
162 213.37 atmosphere 1000 43200 < th dose dependent rect. 2 12
165 213.40 atmosphere 1000 43200 < th dose dependent rect. 3 10
179 213.50 atmosphere 995 43200 < th dose independent no NA NA
184 213.50 atmosphere 1000 43200 < th dose dependent rect. 5 5
193 213.55 atmosphere 1000 43200 < th dose dependent rect. 7 1
196 213.56 atmosphere 1000 43200 < th dose dependent rect. 6 3
215 213.62 atmosphere 995 43200 > th dose independent no NA NA
216 213.62 humidity 50 14400 < th dose independent rect. 16 18
217 213.63 temperature 25 4320 < th dose independent rect. 21 1
220 213.64 atmosphere 995 43200 > th dose independent rect. 20 23
227 213.68 atmosphere 995 43200 < th dose independent rect. 11 15
235 213.73 atmosphere 995 43200 < th dose dependent rect. 12 13
237 213.74 atmosphere 995 43200 < th dose dependent sin 18 NA
260 213.82 atmosphere 1000 43200 < th dose dependent rect. 7 18
266 213.86 temperature 15 90 > th dose dependent rect. 17 13
274 213.88 temperature 20 270 > th dose dependent rect. 15 17
316 214.06 temperature 20 90 > th dose dependent rect. 17 16
351 214.18 humidity 80 14400 > th dose independent rect. 8 1
382 214.31 atmosphere 995 43200 < th dose dependent rect. 13 11
407 214.41 atmosphere 1000 43200 < th dose dependent sin 20 NA
447 214.56 temperature 15 10 > th dose dependent rect. 16 14
460 214.63 atmosphere 1005 90 > th dose independent rect. 20 7
469 214.66 atmosphere 995 43200 > th dose independent rect. 14 23
485 214.73 atmosphere 995 43200 < th dose independent rect. 12 13
500 214.84 atmosphere 1000 43200 < th dose dependent no NA NA
509 214.92 wind 1 14400 > th dose independent rect. 21 2
554 215.08 atmosphere 1000 43200 < th dose independent rect. 18 1
568 215.13 humidity 50 14400 > th dose independent rect. 16 12
583 215.19 atmosphere 1000 43200 < th dose dependent rect. 12 23
586 215.20 humidity 50 14400 > th dose independent rect. 16 9
593 215.23 humidity 50 14400 > th dose independent rect. 16 16
614 215.30 humidity 50 14400 > th dose independent rect. 16 6
623 215.34 radiation 10 4320 < th dose independent rect. 16 15
630 215.38 atmosphere 995 43200 < th dose independent sin 17 NA
666 215.51 radiation 30 14400 < th dose dependent rect. 17 8
667 215.52 radiation 20 14400 < th dose dependent rect. 17 2
670 215.52 atmosphere 1015 10 < th dose dependent rect. 16 14
686 215.56 atmosphere 1000 43200 > th dose independent rect. 18 1
696 215.60 atmosphere 995 43200 < th dose dependent rect. 14 9
702 215.62 radiation 10 4320 < th dose independent rect. 18 13
704 215.62 radiation 20 14400 < th dose dependent rect. 17 5
720 215.67 radiation 1 4320 > th dose dependent rect. 17 14
731 215.73 radiation 10 4320 < th dose independent rect. 21 10
742 215.76 radiation 10 4320 < th dose independent rect. 23 8
752 215.79 radiation 10 4320 < th dose independent rect. 2 5
762 215.80 radiation 1 14400 > th dose dependent rect. 17 2
789 215.86 atmosphere 995 43200 > th dose independent sin 18 NA
940 216.42 atmosphere 1000 43200 < th dose independent rect. 6 14
949 216.45 temperature 20 270 > th dose independent rect. 14 16
1000 216.59 radiation 10 30 < th dose dependent rect. 4 16