Os12g0509300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0509300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.84	(0.0378)	R²	:	0.00261
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.087	(0.0795)	R²_dN8	:	0.00338	R²_N8	:	0.00261
σ	:	0.711
deviance	:	232.31
__

_____

C
peak time of C	:	--
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
216.45	0.691	2.84	0.181	0.0941	-1.82	0.509	-3.81	0.129	14.6	1015	1619	--	--
222.58	0.695	2.83	0.26	0.0775	-0.756	0.653	--	0.146	14.5	1014	2136	--	--
217.18	0.686	2.84	0.184	0.0968	-1.66	--	-3.58	0.133	14.8	1015	1594	--	--
224.25	0.697	2.83	0.278	0.106	-0.949	--	--	0.145	16.2	1014	1636	--	--
217.48	0.687	2.84	0.165	--	-1.44	--	-3.13	0.124	--	1015	1604	--	--
227.94	0.708	2.84	0.252	0.124	--	0.696	--	0.115	15	--	--	--	--
229.56	0.71	2.83	0.267	0.129	--	--	--	0.119	15.3	--	--	--	--
224.83	0.698	2.83	0.28	--	-0.952	--	--	0.144	--	1014	1640	--	--
226.36	0.701	2.84	--	0.0997	-0.899	--	--	0.115	15.6	1014	1669	--	--
230.49	0.709	2.84	0.262	--	--	--	--	0.116	--	--	--	--	--
231.45	0.712	2.84	--	0.123	--	--	--	0.0896	15.3	--	--	--	--
226.91	0.702	2.84	--	--	-0.923	--	--	0.113	--	1014	1669	--	--
232.31	0.711	2.84	--	--	--	--	--	0.087	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	200.32	temperature	25.0	90	< th	dose dependent	rect.	15	2
3	202.28	temperature	25.0	90	< th	dose independent	rect.	15	2
6	206.36	temperature	25.0	10	< th	dose dependent	rect.	15	3
47	208.27	temperature	25.0	10	< th	dose dependent	rect.	9	9
66	209.74	radiation	30.0	4320	< th	dose dependent	rect.	23	1
80	210.13	wind	9.0	1440	< th	dose independent	rect.	23	1
81	210.13	temperature	10.0	1440	> th	dose independent	rect.	23	1
84	210.13	temperature	30.0	1440	< th	dose independent	rect.	23	1
88	210.13	humidity	50.0	1440	> th	dose independent	rect.	23	1
98	210.13	atmosphere	995.0	1440	> th	dose independent	rect.	23	1
99	210.13	radiation	1.0	1440	< th	dose independent	rect.	23	1
119	210.13	temperature	10.0	1440	> th	dose independent	rect.	24	23
122	210.13	radiation	1.0	1440	< th	dose dependent	rect.	23	1
127	210.16	wind	1.0	30	> th	dose dependent	rect.	22	1
130	210.31	temperature	20.0	30	> th	dose independent	rect.	22	1
131	210.31	humidity	80.0	30	> th	dose independent	rect.	22	1
133	210.36	atmosphere	1000.0	30	> th	dose independent	rect.	22	1
134	210.40	wind	1.0	30	> th	dose independent	rect.	22	1
135	210.43	atmosphere	995.0	30	> th	dose dependent	rect.	22	1
136	210.44	temperature	10.0	30	> th	dose dependent	rect.	22	1
141	210.49	wind	7.0	30	< th	dose independent	rect.	22	1
143	210.49	temperature	10.0	30	> th	dose independent	rect.	22	1
146	210.49	temperature	30.0	30	< th	dose independent	rect.	22	1
147	210.49	humidity	50.0	30	> th	dose independent	rect.	22	1
151	210.49	atmosphere	1010.0	30	< th	dose independent	rect.	22	1
153	210.49	radiation	1.0	30	< th	dose independent	rect.	22	1
158	210.49	temperature	10.0	30	> th	dose independent	rect.	23	23
159	210.49	radiation	1.0	30	< th	dose dependent	rect.	22	1
165	210.50	humidity	50.0	30	> th	dose dependent	rect.	22	1
167	210.52	humidity	90.0	30	< th	dose independent	rect.	22	1
174	210.64	atmosphere	1005.0	30	> th	dose dependent	rect.	15	3
175	210.68	wind	9.0	30	< th	dose dependent	rect.	22	1
182	210.98	atmosphere	1015.0	30	< th	dose dependent	rect.	22	1
185	211.05	precipitation	0.1	30	< th	dose independent	rect.	22	1
187	211.05	atmosphere	1005.0	30	> th	dose dependent	rect.	15	1
188	211.05	precipitation	0.1	30	< th	dose dependent	rect.	22	1
194	211.21	temperature	20.0	720	< th	dose independent	rect.	6	1
195	211.21	humidity	90.0	30	< th	dose dependent	rect.	22	1
197	211.27	temperature	30.0	30	< th	dose dependent	rect.	22	1
201	211.41	wind	9.0	30	< th	dose independent	rect.	23	23
208	211.81	humidity	90.0	90	> th	dose independent	rect.	14	1
211	211.81	humidity	90.0	90	> th	dose dependent	rect.	14	1
218	211.88	radiation	20.0	10	< th	dose dependent	rect.	15	1
227	212.21	temperature	25.0	10	< th	dose dependent	rect.	12	6
249	212.65	wind	5.0	1440	< th	dose independent	rect.	12	1
260	212.84	radiation	20.0	90	< th	dose dependent	rect.	15	1
269	213.16	wind	5.0	1440	> th	dose independent	rect.	12	1
272	213.23	temperature	25.0	10	< th	dose dependent	sin	22	NA
274	213.26	temperature	25.0	10	< th	dose dependent	rect.	5	14
276	213.30	temperature	20.0	720	> th	dose independent	rect.	5	6
300	213.37	atmosphere	1010.0	720	> th	dose dependent	rect.	4	2
308	213.53	temperature	20.0	720	> th	dose independent	rect.	6	1
309	213.57	humidity	90.0	720	< th	dose independent	rect.	4	1
322	213.78	radiation	10.0	90	< th	dose independent	rect.	15	1
337	214.08	radiation	10.0	10	< th	dose independent	rect.	15	1
351	214.35	wind	1.0	90	< th	dose independent	rect.	14	1
354	214.39	temperature	20.0	720	> th	dose independent	rect.	5	8
355	214.39	temperature	20.0	270	< th	dose dependent	rect.	6	1
363	214.44	temperature	20.0	720	> th	dose independent	rect.	5	13
379	214.68	temperature	20.0	720	< th	dose independent	rect.	4	14
390	214.76	temperature	20.0	720	< th	dose independent	rect.	4	7
403	214.95	humidity	80.0	720	< th	dose independent	rect.	3	6
404	214.95	temperature	10.0	30	> th	dose dependent	rect.	23	23
415	215.14	temperature	25.0	90	< th	dose independent	rect.	14	20
417	215.15	temperature	30.0	270	< th	dose dependent	rect.	1	16
430	215.28	temperature	25.0	720	< th	dose dependent	rect.	4	12
455	215.46	temperature	25.0	30	< th	dose independent	rect.	4	14
470	215.57	atmosphere	1010.0	720	> th	dose dependent	rect.	24	10
474	215.61	temperature	25.0	30	> th	dose independent	rect.	5	14
484	215.66	wind	3.0	1440	> th	dose dependent	rect.	12	1
532	215.82	humidity	90.0	90	> th	dose dependent	rect.	10	6
601	216.16	radiation	30.0	10	< th	dose dependent	rect.	9	7
631	216.27	temperature	30.0	90	< th	dose dependent	rect.	14	20
633	216.28	humidity	50.0	30	> th	dose dependent	rect.	15	1
641	216.31	temperature	25.0	30	> th	dose independent	rect.	24	19
644	216.34	atmosphere	1015.0	1440	> th	dose independent	rect.	10	12
662	216.38	temperature	30.0	720	< th	dose dependent	rect.	4	1
688	216.45	atmosphere	1015.0	1440	< th	dose independent	rect.	7	14
693	216.45	atmosphere	1015.0	1440	< th	dose independent	rect.	24	21
697	216.46	atmosphere	1015.0	1440	< th	dose independent	rect.	9	12
718	216.51	atmosphere	1015.0	1440	< th	dose independent	rect.	4	17
728	216.54	atmosphere	1015.0	1440	> th	dose independent	sin	22	NA
729	216.54	humidity	90.0	90	> th	dose independent	rect.	10	6
747	216.60	humidity	80.0	720	> th	dose independent	rect.	1	9
756	216.62	atmosphere	1010.0	720	> th	dose dependent	sin	6	NA
763	216.66	humidity	80.0	720	> th	dose independent	rect.	2	7
772	216.70	temperature	20.0	720	> th	dose independent	sin	2	NA
787	216.75	temperature	20.0	1440	> th	dose independent	rect.	22	9
798	216.78	humidity	80.0	720	< th	dose independent	rect.	7	1
824	216.85	temperature	25.0	30	< th	dose independent	rect.	8	11
838	216.87	humidity	80.0	4320	< th	dose dependent	rect.	6	2
852	216.90	atmosphere	1015.0	1440	< th	dose independent	sin	23	NA
857	216.90	wind	7.0	1440	< th	dose dependent	rect.	11	2
861	216.91	temperature	20.0	1440	< th	dose independent	rect.	22	9
883	216.95	humidity	80.0	720	< th	dose dependent	rect.	6	1
908	217.03	temperature	20.0	720	< th	dose independent	sin	2	NA
914	217.04	temperature	20.0	1440	> th	dose independent	rect.	1	3
925	217.06	wind	1.0	90	< th	dose dependent	rect.	4	1
951	217.13	atmosphere	1010.0	720	> th	dose independent	rect.	4	1
963	217.15	temperature	20.0	1440	< th	dose independent	rect.	2	2
965	217.15	temperature	20.0	1440	> th	dose independent	rect.	1	6
978	217.18	temperature	25.0	90	< th	dose dependent	rect.	8	1
981	217.18	atmosphere	1015.0	1440	> th	dose dependent	rect.	11	10