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Os12g0508400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.85 (0.0759) R2 : 0.465
β1 : 2.4 (0.412) R2dD : 0.123 R2D : 0.123
β2 : 1.08 (0.166) R2dC : 0.0516 R2C : 0.0572
β3 : -3.38 (0.234) R2dE : 0.327 R2E : 0.193
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.2 (1.01) R2dD*E : 0.0561 R2D*E : -0.16
γ1 : -1.19 (0.177) R2dN8 : 0.113 R2N8 : 0.0114
σ : 1.22
deviance : 691.48
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C
peak time of C : 3.77
E
wheather : radiation
threshold : 1.491
memory length : 5757
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.12
open length of G : 1.45

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
696.55 1.24 8.85 2.3 1.07 -3.55 -0.432 -4.53 -1.18 3.59 1.452 5686 5.09 1.89
725.96 1.25 8.84 2.43 0.952 -3.12 -0.096 -- -1.09 3.32 2.165 7131 4.46 1.8
691.48 1.22 8.85 2.4 1.08 -3.38 -- -4.2 -1.19 3.77 1.491 5757 5.12 1.45
722.45 1.25 8.89 2.3 1.19 -2.88 -- -- -1.18 3.63 2.271 5761 5.07 1.3
746.05 1.27 8.84 2.31 -- -3.7 -- -4.03 -1.19 -- 1.596 6576 5.21 1.36
1012.9 1.49 8.77 2.33 1.27 -- 0.0629 -- -0.461 3.47 -- -- -- --
1012.91 1.49 8.77 2.33 1.27 -- -- -- -0.462 3.46 -- -- -- --
738.28 1.27 9.03 2.1 -- -3.61 -- -- -1.56 -- 2.03 6604 5.22 0.71
716.93 1.25 8.94 -- 1.3 -3.07 -- -- -1.35 3.81 2.067 40444 5.25 1.55
1102.83 1.55 8.77 2.39 -- -- -- -- -0.428 -- -- -- -- --
1156.29 1.59 8.83 -- 1.31 -- -- -- -0.721 3.45 -- -- -- --
725.43 1.25 9.09 -- -- -4.02 -- -- -2.01 -- 2.103 18060 5.53 1.08
1252.97 1.65 8.83 -- -- -- -- -- -0.693 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 664.73 temperature 10 43200 > th dose dependent rect. 7 1
2 664.77 temperature 30 43200 < th dose dependent rect. 7 1
7 665.23 temperature 10 43200 > th dose dependent rect. 14 1
9 665.30 temperature 10 43200 > th dose dependent rect. 12 22
15 665.34 temperature 10 43200 > th dose dependent rect. 2 22
18 665.35 temperature 10 43200 > th dose dependent rect. 2 19
19 665.35 temperature 10 43200 > th dose dependent rect. 6 19
21 665.35 temperature 10 43200 > th dose dependent rect. 6 21
23 665.36 temperature 10 43200 > th dose dependent rect. 4 20
45 665.40 temperature 10 43200 > th dose dependent rect. 13 11
52 665.40 temperature 10 43200 > th dose dependent rect. 23 22
74 665.43 temperature 10 43200 > th dose dependent rect. 18 23
76 665.44 temperature 10 43200 > th dose dependent no NA NA
101 665.49 temperature 10 43200 > th dose dependent sin 18 NA
104 665.49 temperature 10 43200 > th dose dependent rect. 2 15
196 665.62 temperature 10 43200 > th dose dependent sin 3 NA
204 665.63 temperature 10 43200 > th dose dependent rect. 19 2
249 665.70 temperature 30 43200 < th dose dependent rect. 19 2
313 665.82 temperature 30 43200 < th dose dependent rect. 18 16
360 665.94 temperature 10 43200 > th dose dependent rect. 18 6
375 665.97 temperature 30 43200 < th dose dependent rect. 18 6
530 666.28 temperature 30 43200 < th dose dependent sin 7 NA
580 666.34 temperature 30 43200 < th dose dependent rect. 6 21
581 666.34 temperature 30 43200 < th dose dependent rect. 2 22
607 666.38 temperature 30 43200 < th dose dependent no NA NA
623 666.39 temperature 30 43200 < th dose dependent rect. 23 23