Os12g0507500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SWIb domain-containing protein (Fragment).
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Os12g0507500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SWIb domain-containing protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.09 | 0.475 | 13.8 | 0.104 | 2.46 | -1.29 | -1.04 | -0.695 | -0.729 | 19.3 | 26.94 | 256 | 18.9 | -- |
| 102.85 | 0.472 | 13.8 | -0.00479 | 2.26 | -1.35 | -0.802 | -- | -0.786 | 19.2 | 27 | 268 | 19.7 | -- |
| 103.26 | 0.473 | 13.8 | 0.112 | 2.01 | -1.41 | -- | -0.334 | -0.711 | 19.3 | 27.4 | 250 | 20.5 | -- |
| 103.17 | 0.473 | 13.8 | 0.0417 | 1.78 | -1.55 | -- | -- | -0.744 | 19.2 | 27.6 | 270 | 21.2 | -- |
| 147.24 | 0.565 | 13.7 | 0.284 | -- | -2.96 | -- | 0.428 | -0.528 | -- | 45.82 | 45 | 22.3 | -- |
| 147.24 | 0.569 | 13.8 | 0.271 | 2.96 | -- | -0.429 | -- | -0.528 | 20.1 | -- | -- | -- | -- |
| 147.78 | 0.569 | 13.8 | 0.283 | 2.96 | -- | -- | -- | -0.529 | 20.1 | -- | -- | -- | -- |
| 147.78 | 0.566 | 13.7 | 0.283 | -- | -2.96 | -- | -- | -0.529 | -- | 71.17 | 43 | 22.3 | -- |
| 103.22 | 0.473 | 13.8 | -- | 1.74 | -1.57 | -- | -- | -0.748 | 19.2 | 27.6 | 273 | 21.3 | -- |
| 629.26 | 1.17 | 13.7 | 0.256 | -- | -- | -- | -- | -0.565 | -- | -- | -- | -- | -- |
| 149.9 | 0.573 | 13.8 | -- | 2.96 | -- | -- | -- | -0.56 | 20.1 | -- | -- | -- | -- |
| 149.9 | 0.57 | 13.7 | -- | -- | -2.96 | -- | -- | -0.56 | -- | 103.1 | 38 | 22.2 | -- |
| 630.99 | 1.17 | 13.7 | -- | -- | -- | -- | -- | -0.594 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.36 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 2 | 102.65 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 4 | 103.54 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 5 | 103.62 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 18 | 104.92 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 16 |
| 32 | 106.47 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 8 |
| 37 | 106.53 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 42 | 106.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 43 | 106.72 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 51 | 107.04 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 55 | 107.21 | temperature | 25.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 80 | 108.12 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 100 | 108.58 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 156 | 109.51 | humidity | 80.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 199 | 110.23 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 17 |
| 227 | 110.58 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 260 | 111.15 | humidity | 70.0 | 30 | > th | dose independent | rect. | 6 | 4 |
| 268 | 111.30 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 272 | 111.32 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 2 |
| 283 | 111.37 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 6 |
| 286 | 111.40 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 293 | 111.49 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 20 |
| 303 | 111.64 | temperature | 25.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 319 | 111.87 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 399 | 112.88 | temperature | 25.0 | 270 | < th | dose independent | sin | 0 | NA |
| 411 | 113.02 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 19 |
| 425 | 113.16 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 447 | 113.44 | wind | 3.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 449 | 113.46 | temperature | 30.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 485 | 113.78 | radiation | 40.0 | 30 | < th | dose independent | rect. | 6 | 4 |
| 488 | 113.81 | temperature | 25.0 | 270 | > th | dose independent | sin | 0 | NA |
| 496 | 113.87 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 510 | 114.00 | temperature | 25.0 | 10 | > th | dose independent | rect. | 10 | 9 |
| 524 | 114.13 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 6 |
| 537 | 114.23 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 4 |
| 558 | 114.33 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 566 | 114.37 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 579 | 114.46 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 585 | 114.54 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 8 |
| 608 | 114.70 | wind | 7.0 | 30 | < th | dose independent | rect. | 9 | 21 |
| 616 | 114.77 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 20 |
| 620 | 114.79 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 22 |
| 631 | 114.84 | wind | 7.0 | 30 | < th | dose dependent | rect. | 6 | 3 |
| 634 | 114.85 | radiation | 1.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 637 | 114.87 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 643 | 114.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 663 | 115.11 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 16 |
| 670 | 115.16 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 21 |
| 673 | 115.16 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 21 |
| 674 | 115.17 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 3 |
| 697 | 115.33 | radiation | 1.0 | 90 | < th | dose independent | sin | 9 | NA |
| 733 | 115.62 | radiation | 1.0 | 90 | > th | dose independent | sin | 8 | NA |
| 745 | 115.70 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 756 | 115.74 | humidity | 80.0 | 270 | > th | dose independent | rect. | 5 | 2 |
| 803 | 115.94 | temperature | 25.0 | 10 | > th | dose independent | rect. | 10 | 7 |
| 824 | 116.07 | humidity | 80.0 | 270 | > th | dose independent | rect. | 4 | 16 |
| 828 | 116.07 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 852 | 116.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 22 |
| 857 | 116.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 867 | 116.24 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 6 |
| 870 | 116.25 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 873 | 116.25 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 874 | 116.25 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 877 | 116.25 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 892 | 116.31 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 895 | 116.31 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 897 | 116.31 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 898 | 116.31 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 6 | 3 |
| 899 | 116.31 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 3 |
| 902 | 116.31 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 21 |
| 904 | 116.31 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 3 |
| 913 | 116.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 19 |
| 915 | 116.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 969 | 116.57 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 14 |