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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0507300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRKY 10 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0218) R2 : 0.00139
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0365 (0.0459) R2dN8 : 0.00179 R2N8 : 0.00139
σ : 0.41
deviance : 77.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.78 0.348 2.98 -0.627 0.00274 14.9 0.132 -72.9 0.0541 9.32 1000 10 23 1
68.57 0.389 2.87 -0.00232 0.00454 1.49 0.148 -- 0.0533 9.76 1000 10 23 1
55.83 0.351 2.98 -0.622 0.0146 14.9 -- -73 0.0546 15.1 1000 10 23 1
68.64 0.388 2.87 0.00414 0.0145 1.48 -- -- 0.0538 15.1 1000 10 23 1
55.84 0.35 2.98 -0.623 -- 14.9 -- -73 0.0542 -- 1000 10 23 1
77.09 0.412 2.87 0.0381 0.0406 -- -0.00201 -- 0.0406 22.7 -- -- -- --
77.09 0.411 2.87 0.0382 0.0406 -- -- -- 0.0406 22.8 -- -- -- --
68.66 0.388 2.87 0.00364 -- 1.47 -- -- 0.0534 -- 1000 10 23 1
68.65 0.388 2.87 -- 0.0144 1.48 -- -- 0.0534 15.1 1000 15 23 1.31
77.19 0.411 2.87 0.039 -- -- -- -- 0.0409 -- -- -- -- --
77.13 0.411 2.87 -- 0.0409 -- -- -- 0.0364 22.8 -- -- -- --
68.66 0.387 2.87 -- -- 1.47 -- -- 0.053 -- 1000 10 23 1
77.23 0.41 2.87 -- -- -- -- -- 0.0365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.78 atmosphere 1000 10 < th dose independent rect. 23 1
36 66.20 wind 1 270 < th dose dependent rect. 20 1
77 68.03 wind 1 270 < th dose independent rect. 20 1
171 70.92 atmosphere 1000 90 < th dose independent sin 12 NA
175 70.99 atmosphere 1000 90 > th dose independent sin 12 NA
198 71.37 atmosphere 1000 10 > th dose independent sin 11 NA
199 71.37 atmosphere 1000 10 < th dose independent sin 11 NA
358 72.74 atmosphere 1005 10 < th dose dependent rect. 23 1
387 72.98 humidity 60 1440 > th dose independent rect. 1 8
423 73.22 humidity 60 1440 > th dose independent rect. 5 4
452 73.32 humidity 60 90 < th dose dependent rect. 17 17
461 73.34 humidity 60 30 < th dose independent rect. 16 19
464 73.35 humidity 60 30 < th dose independent rect. 17 17
478 73.38 humidity 60 90 < th dose dependent rect. 18 15
488 73.40 humidity 60 4320 < th dose independent rect. 8 1
521 73.44 humidity 60 1440 > th dose independent rect. 22 11
527 73.44 wind 1 10 < th dose dependent rect. 9 3
540 73.45 humidity 60 1440 < th dose dependent rect. 8 1
584 73.47 humidity 60 270 < th dose independent rect. 8 1
586 73.47 humidity 60 10 < th dose independent rect. 9 1
688 73.47 humidity 60 270 < th dose dependent rect. 8 1
690 73.47 humidity 60 10 < th dose dependent rect. 9 1
821 73.50 wind 1 10 < th dose independent rect. 8 4
824 73.51 wind 1 10 < th dose independent rect. 9 1
844 73.54 radiation 40 30 > th dose dependent rect. 9 2
922 73.58 humidity 60 1440 > th dose independent rect. 20 13
923 73.58 radiation 40 30 > th dose dependent sin 11 NA