Os12g0506800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Autophagocytosis associated protein, C-terminal domain containing protein.
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Os12g0506800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Autophagocytosis associated protein, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.71 | 0.464 | 5.71 | -0.231 | 0.425 | 0.481 | -0.038 | 1.5 | -0.121 | 12.6 | 20.14 | 236 | -- | -- |
| 104.42 | 0.476 | 5.75 | -0.529 | 0.514 | 0.411 | -0.0685 | -- | -0.202 | 13 | 20.9 | 860 | -- | -- |
| 97.71 | 0.46 | 5.71 | -0.234 | 0.425 | 0.48 | -- | 1.49 | -0.121 | 12.6 | 20.14 | 235 | -- | -- |
| 103.89 | 0.475 | 5.75 | -0.49 | 0.537 | 0.376 | -- | -- | -0.215 | 12.8 | 21.2 | 858 | -- | -- |
| 108.44 | 0.485 | 5.71 | -0.254 | -- | 0.587 | -- | 1.55 | -0.135 | -- | 20.1 | 214 | -- | -- |
| 108.02 | 0.487 | 5.73 | -0.365 | 0.488 | -- | 0.336 | -- | -0.112 | 13.2 | -- | -- | -- | -- |
| 108.47 | 0.488 | 5.73 | -0.353 | 0.487 | -- | -- | -- | -0.111 | 13.1 | -- | -- | -- | -- |
| 109.26 | 0.487 | 5.8 | -0.492 | -- | 0.399 | -- | -- | -0.272 | -- | 26.2 | 50 | -- | -- |
| 109.66 | 0.488 | 5.73 | -- | 0.53 | 0.252 | -- | -- | -0.136 | 12.8 | 21.4 | 854 | -- | -- |
| 123.22 | 0.519 | 5.74 | -0.372 | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
| 111.76 | 0.495 | 5.72 | -- | 0.493 | -- | -- | -- | -0.0714 | 13.1 | -- | -- | -- | -- |
| 114.9 | 0.499 | 5.75 | -- | -- | 0.353 | -- | -- | -0.175 | -- | 26.3 | 49 | -- | -- |
| 126.87 | 0.526 | 5.73 | -- | -- | -- | -- | -- | -0.0791 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.36 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 2 | 87.47 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 4 | 88.52 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 5 | 88.64 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 6 | 88.65 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 9 |
| 7 | 88.71 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 11 | 88.79 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 12 | 88.80 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 15 | 88.86 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 19 | 88.92 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 22 | 88.93 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 149 | 89.36 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 170 | 89.49 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 173 | 89.51 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 220 | 89.85 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 230 | 89.87 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 247 | 89.98 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 254 | 90.05 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 435 | 91.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 438 | 91.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 441 | 92.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 442 | 92.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 450 | 92.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 451 | 92.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 453 | 92.49 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 466 | 92.75 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 467 | 92.77 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 470 | 92.79 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 471 | 92.79 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 493 | 93.03 | wind | 5.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 503 | 93.12 | wind | 5.0 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 527 | 93.30 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 530 | 93.31 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 543 | 93.38 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 547 | 93.40 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 2 | 20 |
| 548 | 93.41 | wind | 5.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 595 | 93.55 | wind | 5.0 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 599 | 93.56 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 24 | 22 |
| 655 | 93.73 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 714 | 93.86 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 739 | 93.93 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 807 | 94.10 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 876 | 94.30 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 884 | 94.33 | wind | 5.0 | 14400 | > th | dose independent | rect. | 13 | 20 |
| 885 | 94.33 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 17 |