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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0506700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.044) R2 : 0.0835
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.56 (0.71) R2dE : 0.0825 R2E : 0.0829
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0445 (0.0926) R2dN8 : 0.000601 R2N8 : 0.000978
σ : 0.828
deviance : 314.15
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.07
memory length : 38
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20
open length of G : 1.06

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
306.94 0.823 3.01 0.167 0.0868 17.4 1 28.3 -0.0367 18.6 19.98 11 19.2 1.46
310.63 0.827 2.99 0.114 0.0908 4.76 1.1 -- -0.0362 18.7 20.84 37 20 1.4
309.27 0.819 3.01 0.15 0.103 17.4 -- 28.9 -0.0334 16.8 19.99 11 19.2 1.45
313.34 0.83 2.98 0.0971 0.105 4.54 -- -- -0.0317 16.9 21.05 38 20 1.31
309.83 0.82 3.01 0.146 -- 17.4 -- 28.8 -0.0357 -- 19.99 11 19.2 1.41
339.24 0.863 2.99 0.0498 0.171 -- 0.832 -- -0.0642 18.5 -- -- -- --
340.96 0.865 2.99 0.0385 0.175 -- -- -- -0.0614 18.2 -- -- -- --
313.92 0.829 2.98 0.094 -- 4.58 -- -- -0.0339 -- 21.08 38 20 1.26
313.58 0.829 2.99 -- 0.104 4.52 -- -- -0.0427 16.9 21.05 37 20 1.19
342.55 0.865 2.99 0.0336 -- -- -- -- -0.0653 -- -- -- -- --
341 0.864 2.99 -- 0.175 -- -- -- -0.0657 18.2 -- -- -- --
314.15 0.828 2.98 -- -- 4.56 -- -- -0.0445 -- 21.07 38 20 1.06
342.58 0.864 2.99 -- -- -- -- -- -0.069 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.99 temperature 20.0 10 < th dose dependent rect. 19 1
2 307.02 temperature 20.0 90 < th dose independent rect. 19 1
86 319.83 temperature 20.0 10 < th dose dependent rect. 9 12
121 321.25 wind 7.0 10 > th dose dependent rect. 19 3
139 322.15 humidity 90.0 90 > th dose independent rect. 18 1
141 322.21 humidity 90.0 90 > th dose dependent rect. 18 1
147 322.36 temperature 20.0 90 < th dose independent rect. 8 12
149 322.40 wind 5.0 90 > th dose dependent rect. 18 4
166 322.86 wind 7.0 10 > th dose independent rect. 19 3
186 323.39 wind 5.0 90 > th dose dependent rect. 18 7
197 323.50 atmosphere 1005.0 30 > th dose dependent rect. 19 1
206 323.68 radiation 40.0 30 < th dose independent rect. 22 21
209 323.72 wind 3.0 10 < th dose independent rect. 19 1
220 324.05 atmosphere 1015.0 1440 < th dose independent rect. 7 4
230 324.28 temperature 25.0 720 > th dose independent rect. 12 3
234 324.34 atmosphere 1015.0 1440 < th dose independent rect. 4 7
236 324.39 atmosphere 1015.0 1440 > th dose independent rect. 10 1
252 324.39 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
275 324.53 atmosphere 1015.0 1440 < th dose independent rect. 11 1
290 324.75 wind 7.0 10 > th dose independent rect. 19 1
292 324.75 wind 7.0 10 > th dose dependent rect. 19 1
295 324.78 atmosphere 1000.0 90 < th dose dependent rect. 18 3
299 324.82 wind 5.0 270 > th dose dependent rect. 19 1
305 325.07 radiation 40.0 30 < th dose independent rect. 20 23
307 325.18 atmosphere 1000.0 90 < th dose independent rect. 17 5
311 325.24 atmosphere 1000.0 30 < th dose independent rect. 16 7
355 325.91 radiation 40.0 30 > th dose dependent sin 10 NA
373 326.16 atmosphere 1000.0 10 < th dose dependent rect. 18 4
377 326.25 humidity 50.0 720 > th dose independent rect. 8 12
380 326.26 atmosphere 1000.0 90 < th dose independent rect. 18 3
383 326.32 wind 5.0 270 > th dose independent rect. 19 1
385 326.37 radiation 40.0 30 < th dose independent rect. 6 13
399 326.58 wind 7.0 720 < th dose independent rect. 11 6
412 326.82 radiation 40.0 270 > th dose dependent rect. 8 2
462 327.12 temperature 20.0 10 > th dose independent rect. 14 10
465 327.16 humidity 70.0 90 > th dose independent rect. 19 1
476 327.24 wind 7.0 270 > th dose independent rect. 17 5
478 327.25 humidity 90.0 30 > th dose dependent rect. 15 5
482 327.28 wind 3.0 10 < th dose dependent rect. 20 1
509 327.52 radiation 10.0 270 < th dose independent rect. 20 12
510 327.53 atmosphere 1010.0 90 < th dose independent rect. 22 11
520 327.62 atmosphere 1015.0 90 < th dose independent rect. 20 23
530 327.78 wind 7.0 90 > th dose independent rect. 18 7
536 327.85 atmosphere 1015.0 10 < th dose independent rect. 22 11
569 327.95 humidity 60.0 30 > th dose dependent rect. 19 1
581 328.03 temperature 10.0 270 > th dose dependent rect. 11 13
590 328.08 wind 7.0 270 < th dose independent sin 13 NA
611 328.20 radiation 40.0 30 < th dose independent rect. 11 8
616 328.25 wind 5.0 270 > th dose dependent rect. 16 9
620 328.29 wind 7.0 720 < th dose independent rect. 11 22
622 328.30 wind 7.0 720 < th dose independent rect. 11 14
654 328.40 wind 1.0 90 < th dose dependent rect. 17 4
674 328.50 radiation 1.0 4320 < th dose dependent rect. 20 1
716 328.57 temperature 10.0 1440 > th dose independent rect. 20 1
719 328.57 temperature 30.0 1440 < th dose independent rect. 20 1
723 328.57 humidity 50.0 1440 > th dose independent rect. 20 1
729 328.57 atmosphere 995.0 1440 > th dose independent rect. 20 1
733 328.57 radiation 1.0 1440 < th dose independent rect. 20 1
754 328.57 temperature 10.0 1440 > th dose independent rect. 21 23
778 328.64 atmosphere 1010.0 270 < th dose independent rect. 20 11
780 328.64 radiation 40.0 43200 < th dose dependent rect. 20 1
782 328.65 wind 5.0 270 < th dose independent rect. 14 1
791 328.69 temperature 25.0 720 < th dose independent rect. 11 4
809 328.75 wind 7.0 720 < th dose independent rect. 6 17
813 328.78 temperature 25.0 720 < th dose independent rect. 12 1
821 328.79 wind 7.0 720 < th dose independent rect. 13 19
830 328.81 humidity 50.0 30 > th dose independent rect. 19 19
833 328.82 temperature 20.0 30 < th dose independent sin 20 NA
835 328.82 temperature 15.0 90 > th dose dependent rect. 13 11
836 328.82 radiation 20.0 270 < th dose dependent rect. 20 12
840 328.86 wind 7.0 720 < th dose independent rect. 20 21
851 328.90 humidity 50.0 270 > th dose independent rect. 15 22
856 328.92 temperature 20.0 30 > th dose independent sin 20 NA
863 328.94 wind 9.0 270 < th dose dependent rect. 14 1
872 328.98 humidity 60.0 270 > th dose independent rect. 16 4
873 328.98 wind 7.0 30 < th dose independent rect. 14 5
877 328.98 temperature 15.0 30 > th dose independent rect. 19 19
880 328.99 atmosphere 1015.0 30 < th dose independent rect. 22 21
890 329.02 humidity 90.0 30 < th dose independent rect. 19 3
909 329.08 temperature 15.0 1440 > th dose independent rect. 15 5
919 329.12 atmosphere 1000.0 30 > th dose independent rect. 14 5
925 329.13 wind 7.0 720 < th dose independent rect. 4 14
934 329.16 atmosphere 1005.0 1440 > th dose dependent rect. 14 1
946 329.18 temperature 10.0 1440 > th dose independent rect. 20 19
952 329.19 temperature 10.0 30 > th dose independent rect. 14 5
954 329.19 atmosphere 1010.0 30 < th dose independent rect. 14 5
958 329.19 atmosphere 995.0 30 > th dose independent rect. 19 19
959 329.19 atmosphere 1005.0 10 < th dose dependent rect. 5 1
981 329.23 wind 9.0 30 < th dose dependent rect. 14 5
986 329.24 precipitation 0.1 30 < th dose independent rect. 19 19
988 329.24 precipitation 0.1 30 < th dose dependent rect. 19 19