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Os12g0503200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to TRANSLATION INITIATION FACTOR IF-2P.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.18 (0.018) R2 : 0.49
β1 : -0.954 (0.0657) R2dD : 0.245 R2D : 0.215
β2 : 0.704 (0.0463) R2dC : 0.261 R2C : 0.248
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.148 (0.0383) R2dN8 : 0.0223 R2N8 : -0.0115
σ : 0.337
deviance : 51.92
__
_____
C
peak time of C : 7.37
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.41 0.32 7.15 -1.1 0.7 0.564 -0.236 0.838 -0.0952 7.4 0.196 5038 -- --
46.99 0.319 7.16 -1.05 0.701 0.616 -0.227 -- -0.0878 7.39 0.3293 5038 -- --
46.56 0.318 7.15 -1.1 0.7 0.562 -- 0.826 -0.095 7.38 0.1994 5040 -- --
47.13 0.32 7.16 -1.06 0.702 0.614 -- -- -0.0889 7.36 0.3352 5038 -- --
72.44 0.396 7.17 -1.1 -- 0.547 -- 1.02 -0.0797 -- 0.2348 5293 -- --
51.82 0.337 7.18 -0.95 0.704 -- -0.199 -- -0.148 7.4 -- -- -- --
51.92 0.337 7.18 -0.954 0.704 -- -- -- -0.148 7.37 -- -- -- --
72.76 0.397 7.18 -1.06 -- 0.628 -- -- -0.0818 -- 0.4364 2954 -- --
74.92 0.403 7.14 -- 0.714 0.276 -- -- -0.00793 7.42 0.4988 5299 -- --
78.27 0.413 7.19 -0.943 -- -- -- -- -0.136 -- -- -- -- --
75.93 0.408 7.15 -- 0.695 -- -- -- -0.0416 7.46 -- -- -- --
98.22 0.462 7.15 -- -- 0.344 -- -- 0.0523 -- 0.1288 15406 -- --
101.72 0.471 7.17 -- -- -- -- -- -0.0317 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.71 precipitation 0.1 4320 > th dose dependent rect. 5 2
2 43.81 precipitation 0.1 4320 > th dose independent rect. 5 2
3 44.03 precipitation 0.1 4320 < th dose independent rect. 5 2
4 44.03 precipitation 0.1 4320 < th dose dependent rect. 5 2
11 44.57 precipitation 0.1 4320 > th dose dependent rect. 5 12
16 44.84 humidity 90.0 10 > th dose dependent sin 20 NA
19 44.89 precipitation 0.1 4320 > th dose dependent rect. 10 7
20 44.91 precipitation 0.1 4320 > th dose dependent rect. 13 4
22 44.93 precipitation 0.1 4320 < th dose independent rect. 5 12
24 44.93 precipitation 0.1 4320 < th dose dependent rect. 5 12
25 44.94 precipitation 0.1 4320 > th dose independent rect. 5 12
30 44.99 precipitation 0.1 4320 > th dose dependent rect. 5 9
43 45.17 precipitation 0.1 4320 < th dose independent rect. 13 4
45 45.17 precipitation 0.1 4320 < th dose dependent rect. 13 4
49 45.21 humidity 90.0 4320 > th dose independent rect. 13 1
52 45.22 precipitation 0.1 4320 > th dose independent rect. 5 9
53 45.23 precipitation 0.1 4320 < th dose independent rect. 10 7
55 45.23 precipitation 0.1 4320 < th dose dependent rect. 10 7
58 45.26 precipitation 0.1 4320 > th dose dependent rect. 16 1
61 45.29 precipitation 0.1 4320 > th dose independent rect. 13 4
62 45.32 precipitation 0.1 4320 > th dose independent rect. 10 7
63 45.32 precipitation 0.1 4320 < th dose independent rect. 5 10
64 45.32 precipitation 0.1 4320 < th dose dependent rect. 5 10
76 45.40 precipitation 0.1 14400 < th dose independent rect. 19 1
78 45.40 precipitation 0.1 14400 < th dose dependent rect. 19 1
80 45.41 precipitation 0.1 14400 > th dose dependent rect. 19 1
83 45.43 precipitation 0.1 4320 < th dose independent rect. 3 17
85 45.43 precipitation 0.1 4320 < th dose dependent rect. 3 17
86 45.44 precipitation 0.1 14400 > th dose independent rect. 19 1
94 45.46 precipitation 0.1 4320 > th dose independent rect. 3 17
100 45.48 precipitation 0.1 4320 > th dose independent rect. 5 15
113 45.55 precipitation 0.1 4320 < th dose independent sin 2 NA
116 45.55 precipitation 0.1 4320 < th dose dependent sin 2 NA
124 45.57 precipitation 0.1 4320 > th dose independent sin 2 NA
126 45.59 humidity 90.0 90 > th dose independent sin 20 NA
134 45.63 wind 1.0 4320 > th dose independent rect. 17 3
145 45.68 wind 1.0 4320 < th dose independent rect. 17 2
174 45.76 precipitation 0.1 4320 > th dose dependent rect. 12 2
179 45.79 humidity 90.0 14400 > th dose independent rect. 17 1
181 45.80 precipitation 0.1 4320 < th dose independent rect. 16 1
183 45.80 precipitation 0.1 4320 < th dose dependent rect. 16 1
193 45.83 precipitation 0.1 4320 < th dose independent rect. 9 11
197 45.83 precipitation 0.1 4320 < th dose dependent rect. 9 11
206 45.85 precipitation 0.1 4320 > th dose independent rect. 16 1
232 45.92 humidity 70.0 10 > th dose dependent rect. 16 8
250 45.97 precipitation 0.1 4320 > th dose dependent sin 3 NA
254 45.97 precipitation 0.1 4320 > th dose dependent rect. 18 23
258 45.98 radiation 1.0 14400 < th dose dependent rect. 7 1
297 46.09 humidity 90.0 14400 > th dose dependent rect. 3 19
299 46.10 humidity 90.0 14400 > th dose dependent rect. 18 2
320 46.17 humidity 90.0 14400 > th dose independent rect. 2 20
331 46.20 humidity 80.0 1440 < th dose independent rect. 11 1
334 46.21 humidity 80.0 14400 > th dose independent rect. 10 1
386 46.30 humidity 90.0 14400 > th dose independent rect. 17 17
391 46.31 humidity 80.0 14400 > th dose dependent rect. 9 2
392 46.31 humidity 70.0 14400 < th dose dependent rect. 18 15
395 46.32 humidity 90.0 14400 > th dose independent rect. 17 15
417 46.34 humidity 90.0 90 > th dose independent rect. 5 20
425 46.34 humidity 90.0 14400 > th dose dependent rect. 7 22
426 46.35 humidity 90.0 14400 > th dose independent sin 17 NA
427 46.35 humidity 90.0 14400 > th dose independent rect. 7 1
433 46.35 humidity 90.0 14400 > th dose independent rect. 2 8
446 46.36 humidity 90.0 14400 > th dose dependent sin 16 NA
447 46.36 humidity 70.0 14400 < th dose dependent rect. 19 13
460 46.37 humidity 90.0 14400 > th dose independent rect. 7 21
464 46.37 humidity 90.0 14400 > th dose dependent rect. 15 13
466 46.37 temperature 30.0 90 < th dose dependent rect. 5 19
468 46.38 humidity 90.0 14400 < th dose independent rect. 7 1
470 46.38 humidity 90.0 14400 > th dose independent rect. 2 6
491 46.39 humidity 90.0 14400 > th dose independent rect. 15 13
509 46.40 humidity 90.0 14400 > th dose independent rect. 17 11
510 46.40 humidity 90.0 14400 > th dose independent rect. 13 15
530 46.41 wind 3.0 43200 < th dose independent rect. 5 2
534 46.41 humidity 90.0 14400 > th dose independent rect. 15 10
546 46.42 radiation 1.0 14400 < th dose independent rect. 7 1
554 46.42 humidity 90.0 14400 > th dose independent rect. 13 12
560 46.42 humidity 90.0 14400 > th dose dependent rect. 7 1
568 46.43 wind 3.0 43200 > th dose independent rect. 5 2
604 46.43 humidity 90.0 90 > th dose dependent rect. 7 16
607 46.43 humidity 90.0 14400 > th dose dependent rect. 15 19
622 46.44 humidity 80.0 14400 > th dose dependent rect. 8 7
646 46.45 humidity 90.0 14400 > th dose independent rect. 9 23
663 46.46 humidity 90.0 14400 > th dose independent no NA NA
710 46.48 radiation 1.0 14400 > th dose independent rect. 7 1
735 46.48 precipitation 0.1 4320 > th dose dependent rect. 3 17
754 46.49 humidity 90.0 14400 > th dose independent rect. 9 19
778 46.50 humidity 90.0 90 > th dose independent rect. 7 16
783 46.50 humidity 90.0 14400 > th dose dependent no NA NA
805 46.51 humidity 90.0 14400 < th dose independent rect. 1 21
819 46.51 humidity 90.0 14400 > th dose dependent rect. 9 23
824 46.52 humidity 90.0 14400 < th dose independent rect. 5 5
832 46.52 humidity 90.0 14400 < th dose independent rect. 3 19
855 46.53 humidity 90.0 14400 > th dose independent rect. 21 23
867 46.53 temperature 30.0 90 < th dose dependent rect. 7 17
871 46.54 humidity 90.0 4320 < th dose independent rect. 13 1
875 46.54 humidity 90.0 14400 > th dose independent rect. 9 16
927 46.56 humidity 90.0 14400 < th dose independent rect. 5 17
935 46.56 humidity 90.0 14400 > th dose dependent sin 23 NA
972 46.57 humidity 90.0 14400 > th dose dependent rect. 13 8
984 46.58 humidity 90.0 14400 < th dose independent rect. 1 9