Os12g0502600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0502600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.26 | 0.487 | 3.72 | -0.411 | 0.287 | -1.45 | 1.36 | -0.994 | 0.0284 | 16.7 | 24.35 | 1052 | -- | -- |
| 108.62 | 0.485 | 3.74 | -0.49 | 0.271 | -1.26 | 1.39 | -- | 0.00366 | 16.8 | 24.69 | 1031 | -- | -- |
| 111.95 | 0.493 | 3.72 | -0.448 | 0.294 | -1.45 | -- | -0.761 | 0.0253 | 16.5 | 24.24 | 1033 | -- | -- |
| 112.61 | 0.494 | 3.74 | -0.575 | 0.295 | -1.35 | -- | -- | -0.00019 | 16.6 | 24.5 | 1036 | -- | -- |
| 116.22 | 0.502 | 3.72 | -0.432 | -- | -1.4 | -- | -0.802 | 0.0376 | -- | 24.1 | 890 | -- | -- |
| 134.06 | 0.543 | 3.68 | -0.169 | 0.248 | -- | 1.39 | -- | 0.267 | 17.6 | -- | -- | -- | -- |
| 138.52 | 0.551 | 3.68 | -0.178 | 0.266 | -- | -- | -- | 0.272 | 18.6 | -- | -- | -- | -- |
| 116.99 | 0.504 | 3.73 | -0.564 | -- | -1.3 | -- | -- | 0.00576 | -- | 24.37 | 961 | -- | -- |
| 120.07 | 0.51 | 3.72 | -- | 0.29 | -1.08 | -- | -- | 0.106 | 16.8 | 24.6 | 1012 | -- | -- |
| 142.21 | 0.557 | 3.67 | -0.184 | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
| 139.36 | 0.552 | 3.68 | -- | 0.268 | -- | -- | -- | 0.291 | 18.6 | -- | -- | -- | -- |
| 124.14 | 0.519 | 3.71 | -- | -- | -1.04 | -- | -- | 0.112 | -- | 24.4 | 878 | -- | -- |
| 143.11 | 0.558 | 3.67 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 2 | 103.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 21 | 105.12 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 25 | 105.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 29 | 105.24 | temperature | 25 | 720 | < th | dose dependent | sin | 2 | NA |
| 60 | 105.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 67 | 105.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 252 | 108.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 283 | 108.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 303 | 108.67 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 8 |
| 335 | 109.00 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 6 |
| 361 | 109.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 373 | 109.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 376 | 109.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 388 | 109.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 389 | 109.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 11 |
| 394 | 109.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 399 | 109.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 411 | 109.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 5 |
| 431 | 109.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 439 | 109.49 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 440 | 109.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 451 | 109.52 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 464 | 109.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 516 | 109.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 537 | 109.72 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 566 | 109.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 582 | 109.85 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 641 | 110.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 642 | 110.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 708 | 110.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 709 | 110.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 718 | 110.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 750 | 110.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 766 | 110.33 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 795 | 110.40 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 853 | 110.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 13 |
| 868 | 110.51 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 872 | 110.51 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 897 | 110.55 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 973 | 110.66 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 976 | 110.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 979 | 110.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |