Os12g0501900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0501900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 253.85 | 0.749 | 5.27 | -0.0111 | 2.93 | -2.5 | -1.18 | -9.54 | -0.521 | 21.5 | 0.8722 | 1423 | -- | -- |
| 290.21 | 0.793 | 5.41 | -0.773 | 2.8 | -1.02 | -0.511 | -- | -0.618 | 22 | 9.483 | 5118 | -- | -- |
| 256.29 | 0.746 | 5.27 | -0.0144 | 3.06 | -2.42 | -- | -9.37 | -0.507 | 21.6 | 0.7883 | 1446 | -- | -- |
| 279.52 | 0.779 | 5.43 | -0.732 | 2.95 | -0.88 | -- | -- | -0.728 | 21.6 | 32.98 | 11026 | -- | -- |
| 461.37 | 1.01 | 5.31 | -0.781 | -- | 1.91 | -- | -0.922 | -0.553 | -- | 2.145 | 5366 | -- | -- |
| 304.29 | 0.818 | 5.41 | -0.878 | 3.05 | -- | -0.732 | -- | -0.596 | 21.7 | -- | -- | -- | -- |
| 306.31 | 0.82 | 5.41 | -0.85 | 3.05 | -- | -- | -- | -0.595 | 21.7 | -- | -- | -- | -- |
| 461.19 | 1 | 5.32 | -0.899 | -- | 2 | -- | -- | -0.562 | -- | 7.722 | 11030 | -- | -- |
| 291.65 | 0.795 | 5.44 | -- | 3.03 | -0.988 | -- | -- | -0.746 | 21.7 | 81.56 | 11879 | -- | -- |
| 858.32 | 1.37 | 5.33 | -0.825 | -- | -- | -- | -- | -0.6 | -- | -- | -- | -- | -- |
| 325.36 | 0.844 | 5.39 | -- | 3.05 | -- | -- | -- | -0.5 | 21.6 | -- | -- | -- | -- |
| 482.49 | 1.03 | 5.29 | -- | -- | 1.99 | -- | -- | -0.462 | -- | 7.722 | 11030 | -- | -- |
| 876.25 | 1.38 | 5.3 | -- | -- | -- | -- | -- | -0.509 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.86 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 2 | 245.51 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 5 | 248.32 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 21 | 251.82 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 37 | 253.00 | temperature | 25.0 | 720 | > th | dose independent | rect. | 23 | 12 |
| 48 | 253.54 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 51 | 253.69 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 62 | 253.89 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 74 | 254.33 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 82 | 254.47 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 83 | 254.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 91 | 254.61 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 98 | 254.70 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 105 | 254.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 123 | 254.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 137 | 255.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 141 | 255.10 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 142 | 255.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 145 | 255.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 208 | 255.48 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 213 | 255.56 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 218 | 255.60 | temperature | 25.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 236 | 255.72 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 241 | 255.76 | temperature | 25.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 260 | 255.92 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 269 | 255.98 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 282 | 256.12 | temperature | 25.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 291 | 256.20 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 298 | 256.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 299 | 256.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 322 | 256.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 328 | 256.50 | temperature | 25.0 | 720 | > th | dose independent | sin | 6 | NA |
| 339 | 256.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 340 | 256.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 348 | 256.73 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 353 | 256.73 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 365 | 256.83 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 418 | 257.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 419 | 257.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 429 | 257.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 497 | 257.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 513 | 257.67 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 518 | 257.68 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 523 | 257.69 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 12 |
| 530 | 257.72 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 591 | 258.06 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 592 | 258.06 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 599 | 258.08 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 600 | 258.08 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 603 | 258.10 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 615 | 258.14 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 619 | 258.15 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 620 | 258.15 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 625 | 258.15 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 640 | 258.20 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 12 |
| 660 | 258.26 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 663 | 258.28 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 670 | 258.30 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 682 | 258.33 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 760 | 258.51 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 778 | 258.56 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 806 | 258.62 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 854 | 258.70 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 867 | 258.72 | temperature | 15.0 | 14400 | > th | dose dependent | sin | 16 | NA |
| 872 | 258.73 | temperature | 25.0 | 4320 | > th | dose independent | sin | 8 | NA |
| 875 | 258.74 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 920 | 258.79 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |