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Os12g0500800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transposase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.86 (0.0283) R2 : 0.121
β1 : 0.702 (0.104) R2dD : 0.0915 R2D : 0.0477
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.321 (0.0605) R2dN8 : 0.0729 R2N8 : 0.0291
σ : 0.532
deviance : 129.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
113.18 0.5 5.88 0.775 0.379 -0.424 0.781 -0.965 0.293 15.6 49.18 854 -- --
113.6 0.496 5.87 0.833 0.381 -0.621 0.773 -- 0.28 15.4 49 879 -- --
114.81 0.499 5.88 0.781 0.385 -0.389 -- -1.09 0.296 15 49.09 880 -- --
115.28 0.5 5.87 0.839 0.374 -0.645 -- -- 0.284 15 49.39 880 -- --
123.02 0.517 5.87 0.758 -- -0.488 -- -0.859 0.289 -- 50 912 -- --
117.77 0.509 5.86 0.702 0.41 -- 0.764 -- 0.328 15 -- -- -- --
119.63 0.512 5.86 0.719 0.411 -- -- -- 0.332 14.7 -- -- -- --
123.02 0.517 5.87 0.837 -- -0.78 -- -- 0.272 -- 49.75 914 -- --
132.14 0.535 5.89 -- 0.377 -0.32 -- -- 0.224 14.8 49.49 854 -- --
129.5 0.532 5.86 0.702 -- -- -- -- 0.321 -- -- -- -- --
133.25 0.54 5.88 -- 0.397 -- -- -- 0.252 14.6 -- -- -- --
140.19 0.551 5.89 -- -- -0.448 -- -- 0.207 -- 49.43 880 -- --
142.48 0.557 5.88 -- -- -- -- -- 0.244 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.07 temperature 20.0 10 > th dose dependent rect. 2 1
3 107.42 atmosphere 1005.0 30 > th dose independent rect. 2 1
6 107.52 atmosphere 1000.0 30 > th dose dependent rect. 2 1
8 107.61 temperature 20.0 30 > th dose independent rect. 2 1
9 107.64 wind 5.0 30 < th dose independent rect. 2 1
11 107.66 wind 9.0 30 < th dose dependent rect. 2 1
14 107.69 temperature 10.0 30 > th dose independent rect. 2 1
16 107.69 temperature 30.0 30 < th dose independent rect. 2 1
17 107.69 humidity 50.0 30 > th dose independent rect. 2 1
20 107.69 atmosphere 995.0 30 > th dose independent rect. 2 1
22 107.69 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 107.69 radiation 1.0 30 < th dose independent rect. 2 1
29 107.69 precipitation 0.1 30 < th dose independent rect. 2 1
30 107.69 temperature 10.0 30 > th dose independent rect. 3 23
32 107.69 radiation 1.0 30 < th dose dependent rect. 2 1
37 107.69 precipitation 0.1 30 < th dose dependent rect. 2 1
40 107.72 humidity 50.0 30 > th dose dependent rect. 2 1
48 108.06 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 108.33 wind 1.0 30 > th dose independent rect. 2 1
53 108.42 temperature 30.0 30 < th dose dependent rect. 2 1
59 108.81 wind 3.0 4320 < th dose independent rect. 5 2
62 109.03 wind 3.0 4320 > th dose independent rect. 4 5
64 109.08 temperature 10.0 270 > th dose dependent rect. 19 16
66 109.16 wind 3.0 4320 > th dose independent rect. 5 2
76 109.34 wind 3.0 4320 < th dose independent rect. 4 5
77 109.35 atmosphere 1000.0 270 > th dose independent rect. 10 9
116 109.55 temperature 10.0 90 > th dose dependent rect. 8 17
118 109.57 wind 1.0 270 > th dose independent rect. 10 9
121 109.65 wind 5.0 4320 < th dose dependent rect. 6 1
133 109.86 wind 9.0 270 < th dose independent rect. 19 15
134 109.86 humidity 50.0 270 > th dose independent rect. 19 15
136 109.86 temperature 10.0 270 > th dose dependent rect. 6 18
138 109.88 temperature 10.0 270 > th dose independent rect. 10 9
139 109.88 atmosphere 1015.0 270 < th dose independent rect. 10 9
140 109.88 temperature 10.0 270 > th dose independent rect. 19 15
141 109.88 atmosphere 995.0 270 > th dose independent rect. 19 15
142 109.88 wind 1.0 4320 > th dose dependent rect. 6 1
147 109.91 precipitation 0.1 270 < th dose independent rect. 10 9
148 109.91 precipitation 0.1 270 < th dose dependent rect. 10 9
149 109.93 temperature 10.0 10 > th dose dependent rect. 6 20
158 110.01 wind 1.0 4320 > th dose dependent rect. 8 1
164 110.04 temperature 10.0 10 > th dose dependent rect. 9 17
172 110.11 wind 1.0 4320 > th dose dependent rect. 5 4
177 110.18 wind 3.0 4320 > th dose independent rect. 8 1
178 110.18 wind 1.0 270 > th dose independent rect. 23 6
182 110.20 wind 7.0 4320 < th dose dependent rect. 8 1
183 110.20 wind 7.0 4320 < th dose dependent rect. 5 4
205 110.33 precipitation 0.1 270 < th dose independent rect. 19 15
208 110.33 precipitation 0.1 270 < th dose dependent rect. 19 15
227 110.42 wind 9.0 30 < th dose independent rect. 3 23
235 110.47 wind 9.0 270 < th dose independent rect. 10 9
242 110.52 wind 3.0 4320 < th dose independent rect. 8 1
251 110.55 temperature 30.0 90 < th dose independent rect. 1 18
257 110.57 temperature 30.0 90 < th dose independent rect. 1 20
259 110.57 radiation 10.0 1440 < th dose dependent rect. 11 2
269 110.61 atmosphere 1000.0 270 > th dose dependent rect. 1 2
281 110.65 wind 5.0 4320 < th dose dependent rect. 3 6
282 110.65 temperature 30.0 270 < th dose dependent rect. 23 6
284 110.67 wind 5.0 270 < th dose independent rect. 23 7
290 110.69 temperature 30.0 270 < th dose independent rect. 19 15
297 110.73 wind 7.0 10 < th dose dependent rect. 1 8
299 110.75 wind 1.0 270 > th dose independent rect. 24 4
301 110.76 temperature 10.0 270 > th dose dependent rect. 17 8
304 110.78 atmosphere 995.0 270 > th dose dependent rect. 11 8
308 110.80 temperature 20.0 720 < th dose independent rect. 16 1
320 110.84 radiation 10.0 1440 > th dose independent rect. 11 2
323 110.84 temperature 30.0 90 < th dose independent rect. 11 10
334 110.87 wind 5.0 90 < th dose independent rect. 1 8
352 110.91 atmosphere 1000.0 90 > th dose dependent rect. 1 5
355 110.92 humidity 50.0 270 > th dose independent rect. 10 9
395 111.02 wind 1.0 270 > th dose independent rect. 6 17
399 111.03 wind 9.0 270 < th dose independent rect. 6 17
413 111.07 atmosphere 1000.0 10 > th dose independent rect. 2 20
423 111.10 wind 1.0 14400 < th dose independent rect. 24 3
425 111.10 wind 9.0 90 < th dose dependent rect. 1 8
427 111.11 temperature 15.0 270 > th dose independent rect. 23 7
433 111.12 atmosphere 1000.0 10 > th dose dependent rect. 1 5
440 111.14 wind 5.0 10 < th dose independent rect. 1 8
451 111.16 temperature 20.0 720 < th dose dependent rect. 16 1
468 111.19 wind 1.0 270 > th dose independent rect. 1 2
469 111.19 precipitation 0.1 270 < th dose independent rect. 23 7
471 111.19 precipitation 0.1 270 < th dose dependent rect. 23 7
479 111.22 temperature 10.0 270 > th dose dependent rect. 5 7
481 111.23 temperature 20.0 90 > th dose independent rect. 9 16
482 111.23 atmosphere 995.0 270 > th dose independent rect. 23 21
484 111.23 atmosphere 995.0 270 > th dose dependent rect. 23 6
487 111.24 temperature 20.0 270 > th dose independent rect. 5 19
488 111.25 wind 1.0 270 > th dose independent rect. 20 3
490 111.25 temperature 20.0 270 > th dose independent rect. 19 16
497 111.27 wind 1.0 270 > th dose independent rect. 23 21
504 111.29 wind 3.0 4320 > th dose independent sin 7 NA
505 111.29 temperature 20.0 10 > th dose independent rect. 21 5
507 111.29 temperature 30.0 270 < th dose independent rect. 23 7
508 111.29 humidity 50.0 270 > th dose independent rect. 23 7
511 111.29 atmosphere 995.0 270 > th dose independent rect. 23 7
512 111.29 radiation 20.0 270 < th dose independent rect. 23 7
516 111.29 temperature 10.0 270 > th dose independent rect. 6 17
529 111.30 radiation 40.0 270 < th dose dependent rect. 23 7
530 111.30 radiation 40.0 90 < th dose dependent rect. 1 8
537 111.32 humidity 90.0 10 > th dose independent rect. 2 3
557 111.33 radiation 10.0 10 < th dose dependent rect. 2 20
558 111.34 wind 3.0 4320 < th dose independent sin 7 NA
560 111.34 atmosphere 1015.0 270 < th dose independent rect. 23 6
565 111.34 temperature 10.0 270 > th dose dependent rect. 19 5
574 111.36 temperature 20.0 270 < th dose dependent rect. 24 3
580 111.37 radiation 1.0 270 < th dose independent rect. 23 7
588 111.38 wind 1.0 90 > th dose independent rect. 21 14
598 111.39 temperature 20.0 10 > th dose dependent rect. 21 18
606 111.40 wind 5.0 4320 < th dose dependent rect. 23 11
627 111.44 atmosphere 995.0 30 > th dose independent rect. 3 23
636 111.45 temperature 10.0 90 > th dose dependent rect. 21 4
641 111.46 wind 1.0 14400 > th dose independent rect. 24 3
645 111.47 radiation 10.0 1440 < th dose independent rect. 11 5
651 111.49 wind 9.0 4320 < th dose independent rect. 23 4
663 111.51 humidity 50.0 90 > th dose dependent rect. 21 4
669 111.52 temperature 30.0 270 < th dose dependent rect. 1 2
674 111.53 precipitation 0.1 270 < th dose independent rect. 22 23
678 111.53 precipitation 0.1 270 < th dose dependent rect. 22 23
702 111.57 precipitation 0.1 90 < th dose independent rect. 1 20
707 111.57 precipitation 0.1 90 < th dose dependent rect. 1 20
708 111.58 wind 7.0 90 < th dose independent rect. 21 4
715 111.58 temperature 10.0 10 > th dose dependent rect. 21 5
719 111.58 wind 1.0 4320 > th dose dependent rect. 23 11
723 111.59 temperature 20.0 270 > th dose independent rect. 17 8
728 111.60 temperature 20.0 270 > th dose independent rect. 19 5
737 111.61 precipitation 0.1 270 < th dose independent rect. 5 18
739 111.61 temperature 10.0 270 > th dose dependent rect. 21 1
742 111.61 precipitation 0.1 270 < th dose dependent rect. 5 18
744 111.62 wind 9.0 4320 < th dose independent rect. 3 3
745 111.62 wind 9.0 90 < th dose independent rect. 9 16
753 111.63 humidity 90.0 270 < th dose independent rect. 11 8
754 111.63 wind 1.0 10 > th dose independent rect. 22 17
756 111.63 wind 9.0 270 < th dose independent rect. 3 22
762 111.64 precipitation 0.1 90 < th dose independent rect. 1 7
764 111.64 wind 1.0 270 > th dose independent rect. 24 19
767 111.64 precipitation 0.1 90 < th dose dependent rect. 1 7
770 111.65 radiation 40.0 90 < th dose independent rect. 1 8
771 111.65 radiation 40.0 270 < th dose independent rect. 19 15
773 111.65 humidity 60.0 10 > th dose dependent rect. 22 4
792 111.67 temperature 20.0 10 > th dose independent rect. 6 20
806 111.68 wind 7.0 90 < th dose dependent rect. 1 4
810 111.69 wind 1.0 14400 < th dose independent rect. 1 1
813 111.70 temperature 20.0 30 > th dose independent rect. 19 7
826 111.71 atmosphere 1005.0 30 > th dose independent rect. 1 5
828 111.71 humidity 50.0 720 > th dose independent rect. 15 12
845 111.73 temperature 10.0 1440 > th dose independent rect. 3 3
848 111.73 temperature 30.0 1440 < th dose independent rect. 3 3
852 111.73 humidity 50.0 1440 > th dose independent rect. 3 3
861 111.73 atmosphere 995.0 1440 > th dose independent rect. 3 3
862 111.73 radiation 20.0 1440 < th dose independent rect. 3 3
874 111.73 temperature 15.0 90 > th dose independent rect. 1 20
876 111.73 temperature 10.0 1440 > th dose independent rect. 6 21
888 111.74 wind 1.0 14400 > th dose independent rect. 1 1
900 111.75 atmosphere 1015.0 270 < th dose independent rect. 6 17
921 111.77 temperature 30.0 90 < th dose independent rect. 1 8
924 111.77 temperature 20.0 10 > th dose independent rect. 21 15
929 111.77 radiation 1.0 43200 < th dose dependent rect. 3 1
948 111.79 temperature 10.0 90 > th dose independent rect. 21 4
949 111.79 temperature 30.0 90 < th dose independent rect. 21 4
950 111.79 humidity 50.0 90 > th dose independent rect. 21 4
953 111.79 atmosphere 995.0 90 > th dose independent rect. 21 4
954 111.79 radiation 1.0 90 < th dose independent rect. 21 4
961 111.79 atmosphere 1015.0 90 < th dose independent rect. 1 20
962 111.79 radiation 1.0 90 < th dose dependent rect. 21 4
972 111.80 temperature 20.0 10 > th dose independent rect. 21 18
978 111.81 radiation 10.0 1440 < th dose independent rect. 11 2
987 111.81 temperature 30.0 90 < th dose dependent rect. 1 7
992 111.82 atmosphere 995.0 270 > th dose independent rect. 12 17