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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0500500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0175) R2 : 2.86e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00133 (0.0368) R2dN8 : 3.69e-06 R2N8 : 2.86e-06
σ : 0.329
deviance : 49.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.26 0.323 3.03 0.0542 0.107 -0.176 -0.308 -0.088 0.00968 3.56 19.7 9 -- --
47.28 0.32 3.03 0.0541 0.111 -0.181 -0.363 -- 0.00907 3.26 19.74 8 -- --
47.48 0.321 3.03 0.0606 0.0986 -0.169 -- -0.192 0.0169 3.73 19.67 8 -- --
47.66 0.322 3.03 0.0564 0.111 -0.176 -- -- 0.0149 3.43 18.05 7 -- --
47.96 0.323 3.03 0.0543 -- -0.125 -- -0.193 0.0144 -- 18.05 7 -- --
48.7 0.327 3.03 0.0598 0.104 -- 0.218 -- 0.00848 10.3 -- -- -- --
48.83 0.327 3.03 0.0672 0.11 -- -- -- 0.00819 9.18 -- -- -- --
48.15 0.323 3.03 0.064 -- -0.128 -- -- 0.0152 -- 18.16 7 -- --
47.75 0.322 3.03 -- 0.111 -0.175 -- -- 0.0123 3.34 18.07 7 -- --
49.53 0.329 3.03 0.0668 -- -- -- -- 0.00874 -- -- -- -- --
48.95 0.327 3.03 -- 0.11 -- -- -- 0.000703 9.13 -- -- -- --
48.26 0.324 3.03 -- -- -0.128 -- -- 0.00819 -- 18.15 7 -- --
49.65 0.329 3.04 -- -- -- -- -- 0.00133 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.33 temperature 30.0 10 > th dose independent rect. 10 1
3 45.59 temperature 25.0 90 > th dose independent rect. 1 3
4 45.61 temperature 25.0 90 > th dose dependent rect. 2 2
7 45.90 atmosphere 1000.0 30 > th dose independent rect. 3 23
8 45.94 atmosphere 1005.0 90 > th dose dependent rect. 2 1
9 45.97 radiation 1.0 14400 < th dose dependent rect. 3 1
10 45.98 temperature 25.0 270 > th dose independent rect. 2 1
24 46.04 wind 9.0 1440 < th dose independent rect. 3 1
25 46.04 temperature 10.0 1440 > th dose independent rect. 3 1
28 46.04 temperature 30.0 1440 < th dose independent rect. 3 1
32 46.04 humidity 50.0 1440 > th dose independent rect. 3 1
41 46.04 atmosphere 995.0 1440 > th dose independent rect. 3 1
42 46.04 radiation 1.0 1440 < th dose independent rect. 3 1
62 46.04 temperature 10.0 1440 > th dose independent rect. 4 23
76 46.06 atmosphere 1005.0 30 > th dose independent rect. 2 1
83 46.07 wind 3.0 30 < th dose dependent rect. 2 1
87 46.08 wind 3.0 30 < th dose independent rect. 2 1
88 46.08 humidity 90.0 30 > th dose independent rect. 2 1
99 46.09 humidity 50.0 30 > th dose dependent rect. 2 1
104 46.10 temperature 10.0 30 > th dose independent rect. 2 1
106 46.10 temperature 30.0 30 < th dose independent rect. 2 1
107 46.10 humidity 50.0 30 > th dose independent rect. 2 1
111 46.10 atmosphere 1010.0 30 < th dose independent rect. 2 1
113 46.10 radiation 1.0 30 < th dose independent rect. 2 1
118 46.10 precipitation 0.1 30 < th dose independent rect. 2 1
120 46.10 temperature 10.0 30 > th dose independent rect. 3 23
121 46.10 radiation 1.0 30 < th dose dependent rect. 2 1
126 46.10 precipitation 0.1 30 < th dose dependent rect. 2 1
133 46.14 atmosphere 1015.0 30 < th dose dependent rect. 2 1
134 46.15 atmosphere 1005.0 10 > th dose dependent rect. 2 3
135 46.16 temperature 30.0 30 < th dose dependent rect. 2 1
137 46.18 wind 1.0 30 > th dose independent rect. 2 1
154 46.24 precipitation 0.1 30 < th dose independent rect. 3 23
156 46.24 precipitation 0.1 30 < th dose dependent rect. 3 23
193 46.30 radiation 20.0 10 < th dose independent rect. 3 23
205 46.48 wind 9.0 30 < th dose independent rect. 3 23
210 46.50 radiation 30.0 10 < th dose dependent rect. 3 23
238 46.69 humidity 50.0 30 > th dose independent rect. 3 23
242 46.71 radiation 20.0 90 < th dose independent rect. 3 8
246 46.74 temperature 30.0 10 > th dose independent rect. 18 17
263 46.82 temperature 30.0 30 < th dose independent rect. 3 23
271 46.85 temperature 25.0 1440 < th dose independent rect. 1 2
283 46.90 humidity 70.0 30 > th dose dependent rect. 3 23
284 46.91 temperature 30.0 10 < th dose independent rect. 12 22
294 46.94 humidity 70.0 10 > th dose independent rect. 3 7
308 46.98 temperature 25.0 30 > th dose dependent rect. 24 10
326 46.99 humidity 90.0 270 < th dose independent rect. 22 14
345 47.01 wind 3.0 30 < th dose dependent rect. 2 3
349 47.02 temperature 30.0 10 < th dose independent sin 9 NA
350 47.02 temperature 25.0 270 < th dose independent rect. 23 8
364 47.03 radiation 20.0 90 < th dose independent rect. 3 10
375 47.03 radiation 30.0 90 < th dose dependent rect. 3 8
378 47.05 temperature 30.0 10 < th dose independent rect. 3 7
383 47.05 temperature 25.0 30 > th dose dependent rect. 18 16
386 47.06 temperature 25.0 30 > th dose dependent rect. 6 4
388 47.06 temperature 10.0 30 > th dose dependent rect. 9 18
389 47.07 humidity 90.0 90 < th dose independent rect. 2 1
397 47.08 radiation 20.0 90 > th dose independent sin 6 NA
398 47.08 radiation 20.0 90 < th dose independent sin 7 NA
400 47.08 atmosphere 1005.0 30 > th dose independent rect. 2 3
403 47.08 radiation 20.0 90 < th dose independent rect. 3 12
405 47.08 temperature 25.0 30 > th dose dependent rect. 8 2
420 47.10 humidity 90.0 720 < th dose independent rect. 1 1
422 47.10 radiation 20.0 90 < th dose independent rect. 3 14
430 47.11 temperature 30.0 10 < th dose independent rect. 3 17
438 47.12 radiation 20.0 10 < th dose independent rect. 13 21
440 47.12 humidity 70.0 10 > th dose independent rect. 3 23
449 47.13 temperature 10.0 30 > th dose dependent rect. 3 6
459 47.14 wind 3.0 10 < th dose dependent rect. 22 5
461 47.14 temperature 10.0 270 > th dose dependent rect. 19 8
468 47.15 atmosphere 1015.0 30 < th dose independent rect. 9 18
471 47.15 radiation 20.0 10 > th dose independent rect. 15 23
479 47.16 wind 1.0 90 > th dose dependent rect. 9 3
483 47.17 radiation 20.0 10 > th dose independent sin 4 NA
488 47.17 temperature 30.0 10 < th dose independent rect. 16 17
495 47.18 radiation 20.0 90 > th dose independent rect. 7 6
514 47.18 temperature 30.0 10 > th dose independent rect. 16 19
515 47.18 temperature 30.0 10 < th dose independent rect. 3 19
524 47.19 wind 3.0 10 < th dose independent rect. 22 7
534 47.20 humidity 90.0 270 < th dose independent sin 7 NA
542 47.20 temperature 15.0 30 > th dose independent rect. 9 18
555 47.20 humidity 50.0 90 > th dose dependent rect. 3 6
557 47.20 wind 9.0 270 < th dose dependent rect. 18 9
559 47.20 humidity 50.0 90 > th dose dependent rect. 16 17
560 47.20 temperature 25.0 30 > th dose dependent rect. 16 18
569 47.21 wind 9.0 30 < th dose independent rect. 3 6
570 47.21 temperature 10.0 30 > th dose independent rect. 3 6
574 47.21 humidity 50.0 30 > th dose independent rect. 3 6
576 47.21 atmosphere 995.0 30 > th dose independent rect. 3 6
577 47.21 atmosphere 1015.0 30 < th dose independent rect. 3 6
578 47.21 precipitation 0.1 30 < th dose independent rect. 3 6
585 47.21 radiation 20.0 10 < th dose independent rect. 3 11
592 47.21 wind 9.0 30 < th dose independent rect. 9 18
594 47.21 precipitation 0.1 30 < th dose independent rect. 9 18
595 47.21 radiation 20.0 90 < th dose independent rect. 13 22
597 47.21 precipitation 0.1 30 < th dose dependent rect. 3 6
600 47.21 precipitation 0.1 30 < th dose dependent rect. 9 18
608 47.22 wind 5.0 270 < th dose independent rect. 18 9
618 47.22 wind 1.0 270 > th dose dependent rect. 9 1
621 47.22 wind 9.0 30 < th dose dependent rect. 3 6
650 47.23 humidity 70.0 10 > th dose independent rect. 16 18
658 47.23 wind 5.0 10 < th dose dependent rect. 20 7
659 47.23 humidity 70.0 30 > th dose dependent rect. 3 8
669 47.24 wind 3.0 10 < th dose independent rect. 20 9
679 47.24 radiation 30.0 90 < th dose dependent rect. 3 10
689 47.25 humidity 70.0 10 > th dose independent rect. 14 20
693 47.25 temperature 15.0 30 > th dose dependent rect. 22 5
705 47.26 radiation 20.0 10 > th dose independent rect. 7 7
713 47.26 humidity 80.0 90 > th dose independent rect. 3 11
727 47.26 atmosphere 1000.0 30 > th dose independent rect. 13 20
744 47.27 temperature 25.0 270 > th dose independent sin 10 NA
751 47.27 wind 3.0 90 < th dose independent rect. 22 5
754 47.27 temperature 10.0 1440 > th dose independent rect. 4 6
757 47.27 atmosphere 995.0 1440 > th dose independent rect. 4 6
758 47.27 atmosphere 1015.0 1440 < th dose independent rect. 4 6
764 47.27 temperature 10.0 1440 > th dose independent rect. 10 18
767 47.27 humidity 90.0 90 < th dose independent rect. 8 19
780 47.27 radiation 20.0 270 < th dose dependent sin 7 NA
793 47.27 wind 5.0 10 < th dose dependent rect. 18 9
797 47.28 atmosphere 1005.0 90 < th dose independent rect. 8 1
798 47.28 atmosphere 1005.0 10 < th dose independent rect. 8 2
816 47.28 radiation 20.0 10 < th dose independent rect. 5 17
829 47.28 radiation 30.0 90 < th dose dependent rect. 3 12
840 47.29 temperature 20.0 30 > th dose independent rect. 22 5
850 47.29 atmosphere 995.0 90 > th dose dependent rect. 3 6
922 47.31 radiation 20.0 10 < th dose independent sin 6 NA
925 47.31 radiation 10.0 270 > th dose independent rect. 9 1
927 47.31 wind 3.0 30 < th dose independent rect. 2 3
946 47.31 radiation 20.0 10 < th dose independent rect. 23 23
965 47.32 humidity 90.0 270 < th dose independent rect. 19 8
966 47.32 humidity 90.0 270 > th dose independent rect. 21 10
968 47.32 humidity 90.0 30 < th dose independent rect. 9 15
970 47.32 humidity 70.0 10 > th dose independent rect. 3 17
971 47.32 wind 1.0 90 > th dose independent rect. 9 18
978 47.32 radiation 20.0 10 < th dose independent rect. 15 23
995 47.32 radiation 30.0 90 < th dose dependent rect. 3 14
997 47.33 radiation 20.0 10 < th dose independent no NA NA