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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0499200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.84 (0.0478) R2 : 0.317
β1 : 0.392 (0.182) R2dD : 0.0078 R2D : -0.0107
β2 : 0.652 (0.12) R2dC : 0.0446 R2C : 0.0598
β3 : 2.26 (0.177) R2dE : 0.293 R2E : 0.2
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.87 (0.543) R2dD*E : 0.0509 R2D*E : -0.0388
γ1 : 0.414 (0.107) R2dN8 : 0.0339 R2N8 : -0.0274
σ : 0.884
deviance : 360.33
__
_____
C
peak time of C : 3.78
E
wheather : wind
threshold : 4.3
memory length : 4830
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23.8
open length of G : 1.11

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
358.24 0.889 3.85 0.333 0.658 2.43 -1.29 -3.25 0.43 4.33 4.399 4865 23.8 1.01
376.74 0.904 3.83 0.268 0.681 2.21 -1.61 -- 0.454 4.51 4.214 4986 23.9 1.03
360.33 0.884 3.84 0.392 0.652 2.26 -- -2.87 0.414 3.78 4.3 4830 23.8 1.11
383.36 0.912 3.83 0.247 0.694 2.2 -- -- 0.45 3.63 4.209 4986 23.9 1.02
383.53 0.912 3.84 0.424 -- 2.36 -- -2.94 0.452 -- 4.252 4867 23.8 1.12
484.73 1.03 3.93 0.0609 0.83 -- -1.59 -- -0.0282 4.49 -- -- -- --
491.12 1.04 3.93 0.0713 0.818 -- -- -- -0.02 4.11 -- -- -- --
405.96 0.938 3.84 0.233 -- 2.14 -- -- 0.409 -- 4.213 4927 23.9 1.02
382.7 0.911 3.87 -- 0.648 2.06 -- -- 0.398 3.71 4.3 4927 23.9 0.983
527.49 1.07 3.93 0.104 -- -- -- -- 0.00179 -- -- -- -- --
491.25 1.04 3.93 -- 0.82 -- -- -- -0.0279 4.1 -- -- -- --
405.04 0.937 3.87 -- -- 2.02 -- -- 0.306 -- 4.299 4918 23.9 0.85
527.78 1.07 3.94 -- -- -- -- -- -0.00979 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 377.25 wind 3.0 4320 > th dose dependent rect. 24 1
2 379.00 wind 1.0 43200 < th dose dependent rect. 15 6
4 380.06 humidity 80.0 43200 < th dose independent rect. 3 12
7 380.79 humidity 80.0 43200 > th dose independent rect. 4 10
9 381.05 humidity 80.0 43200 < th dose independent rect. 4 10
12 381.80 humidity 80.0 43200 > th dose independent rect. 3 12
13 382.07 radiation 1.0 43200 > th dose independent rect. 10 3
14 382.36 humidity 80.0 43200 > th dose independent rect. 5 8
15 382.71 radiation 1.0 43200 < th dose independent rect. 10 3
17 382.96 wind 1.0 43200 > th dose independent rect. 16 5
18 383.00 wind 1.0 43200 > th dose independent rect. 15 8
19 383.24 humidity 80.0 43200 < th dose independent rect. 2 14
22 383.49 radiation 1.0 43200 < th dose dependent rect. 10 3
31 384.26 wind 1.0 43200 < th dose independent rect. 16 5
32 384.87 humidity 80.0 43200 < th dose independent sin 3 NA
33 384.99 radiation 1.0 43200 < th dose dependent rect. 9 6
34 385.13 temperature 25.0 43200 < th dose dependent rect. 11 1
35 385.17 temperature 25.0 43200 < th dose dependent rect. 11 3
46 385.67 wind 5.0 43200 < th dose independent rect. 11 1
62 386.33 humidity 80.0 43200 > th dose independent sin 3 NA
66 386.45 wind 5.0 43200 > th dose independent rect. 11 1
69 386.58 radiation 1.0 43200 < th dose dependent rect. 6 1
74 386.78 radiation 1.0 43200 < th dose dependent rect. 6 10
77 386.87 wind 5.0 43200 > th dose independent rect. 10 3
85 387.28 humidity 80.0 43200 > th dose dependent rect. 12 1
89 387.40 wind 3.0 43200 > th dose dependent rect. 21 16
91 387.45 temperature 20.0 43200 > th dose independent rect. 7 15
97 387.58 temperature 20.0 43200 > th dose independent rect. 7 1
98 387.58 wind 5.0 43200 > th dose dependent rect. 11 1
99 387.61 precipitation 0.1 43200 < th dose independent rect. 8 2
100 387.61 precipitation 0.1 43200 < th dose dependent rect. 8 2
103 387.75 precipitation 0.1 43200 > th dose independent rect. 8 2
104 387.75 precipitation 0.1 43200 > th dose dependent rect. 8 2
113 387.87 humidity 80.0 43200 > th dose dependent rect. 11 3
134 388.23 humidity 80.0 43200 < th dose independent rect. 1 16
145 388.32 temperature 20.0 43200 < th dose independent rect. 7 1
146 388.34 temperature 20.0 43200 > th dose independent sin 21 NA
148 388.36 temperature 20.0 43200 < th dose independent rect. 6 16
152 388.44 temperature 25.0 43200 > th dose independent rect. 11 1
155 388.47 radiation 10.0 43200 > th dose independent rect. 10 1
158 388.50 wind 5.0 43200 < th dose independent rect. 23 15
167 388.59 wind 5.0 4320 > th dose independent rect. 24 1
180 388.73 wind 5.0 4320 < th dose independent rect. 24 1
194 388.88 wind 5.0 43200 < th dose independent rect. 19 18
218 389.10 temperature 20.0 43200 < th dose independent sin 21 NA
225 389.12 wind 5.0 43200 < th dose independent rect. 2 12
273 389.39 wind 5.0 43200 > th dose independent rect. 23 15
276 389.40 wind 3.0 43200 > th dose dependent rect. 20 10
279 389.44 temperature 25.0 43200 < th dose independent rect. 11 1
306 389.65 wind 5.0 43200 > th dose independent rect. 3 11
308 389.66 temperature 20.0 43200 > th dose independent rect. 6 11
317 389.72 temperature 20.0 43200 > th dose independent rect. 6 8
326 389.78 wind 5.0 43200 > th dose independent rect. 19 18
358 389.91 wind 5.0 43200 > th dose dependent rect. 4 9
367 389.96 wind 5.0 43200 < th dose independent sin 6 NA
379 390.01 wind 3.0 43200 > th dose dependent sin 8 NA
388 390.04 temperature 20.0 43200 > th dose independent rect. 21 1
402 390.10 temperature 20.0 43200 < th dose independent rect. 21 2
477 390.42 temperature 20.0 43200 < th dose independent rect. 6 11
485 390.47 temperature 20.0 43200 < th dose independent rect. 6 8
496 390.49 radiation 1.0 14400 < th dose dependent rect. 20 9
526 390.61 humidity 70.0 43200 > th dose dependent rect. 2 13
531 390.62 humidity 70.0 43200 > th dose dependent rect. 7 21
554 390.70 wind 5.0 43200 > th dose independent sin 5 NA
562 390.71 radiation 1.0 14400 < th dose dependent rect. 22 7
565 390.72 humidity 90.0 43200 > th dose independent rect. 10 1
680 391.15 wind 3.0 14400 > th dose independent rect. 15 1
714 391.24 humidity 70.0 43200 > th dose dependent sin 4 NA
727 391.29 temperature 20.0 43200 < th dose independent no NA NA
728 391.29 temperature 20.0 43200 < th dose independent rect. 18 23
734 391.31 temperature 20.0 43200 < th dose independent rect. 13 23
735 391.31 temperature 20.0 43200 < th dose independent rect. 15 23
743 391.33 temperature 20.0 43200 < th dose independent rect. 10 23
751 391.34 temperature 20.0 43200 < th dose independent rect. 20 23
768 391.37 temperature 20.0 43200 > th dose independent no NA NA
775 391.39 temperature 20.0 43200 > th dose independent rect. 13 23
776 391.39 temperature 20.0 43200 > th dose independent rect. 18 23
783 391.40 temperature 20.0 43200 > th dose independent rect. 15 23
924 391.64 wind 3.0 14400 < th dose independent rect. 15 1