Os12g0498500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0498500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.77	(0.0269)	R²	:	0.228
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	3.88	(0.335)	R²_dE	:	0.228	R²_E	:	0.226
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0485	(0.0567)	R²_dN8	:	0.00161	R²_N8	:	-0.000465
σ	:	0.506
deviance	:	117.85
__

_____

C
peak time of C	:	--
E
wheather	:	atmosphere
threshold	:	1008
memory length	:	216
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	13.5
open length of G	:	4.6

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
115.48	0.505	2.81	0.0492	0.0281	1.75	0.425	6.75	-0.0794	9.11	1007	148	13.8	5.73
117.88	0.506	2.76	-0.066	0.0992	4.08	0.0715	--	0.0738	19.7	1008	223	13.5	4.7
115.8	0.501	2.8	0.0375	0.0317	1.89	--	6.87	-0.0725	8.34	1007	148	13.8	5.73
117.42	0.505	2.78	-0.109	0.0596	3.98	--	--	0.0418	19.4	1008	215	13.5	4.65
115.84	0.501	2.8	0.049	--	1.88	--	7.05	-0.0666	--	1007	150	13.8	5.72
150.74	0.576	2.78	0.00584	0.136	--	0.548	--	0.0164	16.7	--	--	--	--
151.25	0.576	2.78	0.00762	0.159	--	--	--	0.0189	18.4	--	--	--	--
117.59	0.505	2.77	-0.1	--	3.9	--	--	0.0378	--	1008	215	13.5	4.61
117.66	0.505	2.77	--	0.06	3.92	--	--	0.0489	19.2	1008	215	13.5	4.65
152.56	0.577	2.78	0.00345	--	--	--	--	0.0155	--	--	--	--	--
151.25	0.575	2.78	--	0.159	--	--	--	0.0181	18.4	--	--	--	--
117.85	0.506	2.77	--	--	3.88	--	--	0.0485	--	1008	216	13.5	4.6
152.56	0.577	2.78	--	--	--	--	--	0.0152	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	129.50	atmosphere	1005	90	> th	dose dependent	rect.	14	6
2	130.87	humidity	90	90	> th	dose independent	rect.	14	1
5	130.87	humidity	90	90	> th	dose dependent	rect.	14	1
11	131.05	radiation	1	10	< th	dose independent	rect.	13	3
23	131.08	radiation	1	10	< th	dose independent	rect.	15	1
71	132.60	atmosphere	1005	270	> th	dose dependent	rect.	15	2
76	133.17	radiation	1	10	< th	dose dependent	rect.	15	1
89	133.39	radiation	10	90	< th	dose dependent	rect.	14	1
93	133.49	temperature	25	270	< th	dose dependent	rect.	15	1
98	133.53	temperature	25	270	< th	dose independent	rect.	15	1
103	134.16	temperature	25	270	< th	dose dependent	rect.	14	3
115	134.97	wind	7	10	> th	dose dependent	rect.	19	8
135	135.81	wind	7	10	> th	dose independent	rect.	19	8
138	135.87	temperature	25	270	< th	dose independent	rect.	13	4
150	136.30	wind	7	10	> th	dose independent	rect.	19	3
155	136.30	wind	7	10	> th	dose dependent	rect.	19	3
160	136.31	wind	7	10	> th	dose independent	rect.	19	1
161	136.31	temperature	20	90	< th	dose independent	rect.	18	1
163	136.31	radiation	1	10	< th	dose independent	rect.	5	12
164	136.31	wind	7	10	> th	dose dependent	rect.	19	1
165	136.31	temperature	20	90	< th	dose dependent	rect.	18	1
243	137.02	wind	1	10	> th	dose dependent	rect.	1	1
254	137.25	wind	5	10	> th	dose independent	rect.	24	2
258	137.25	wind	5	10	> th	dose dependent	rect.	24	2
327	137.83	temperature	20	30	> th	dose independent	rect.	1	1
362	138.06	wind	1	90	< th	dose dependent	rect.	24	1
499	139.25	wind	9	270	> th	dose independent	rect.	19	3
521	139.25	wind	9	270	> th	dose dependent	rect.	19	3
540	139.26	wind	9	270	> th	dose independent	rect.	21	1
548	139.26	wind	9	30	> th	dose independent	rect.	21	5
567	139.26	wind	9	30	> th	dose independent	rect.	1	10
587	139.26	wind	9	270	> th	dose dependent	rect.	21	1
597	139.26	wind	9	30	> th	dose dependent	rect.	21	5
619	139.26	wind	9	30	> th	dose dependent	rect.	1	10
675	139.33	temperature	25	10	< th	dose independent	rect.	15	1
858	139.38	wind	5	90	> th	dose dependent	rect.	17	3
894	139.60	temperature	30	30	> th	dose dependent	rect.	13	3
920	139.80	wind	5	10	> th	dose dependent	sin	11	NA