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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0497700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0345) R2 : 0.161
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.841 (0.0905) R2dC : 0.16 R2C : 0.157
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0888 (0.0726) R2dN8 : 0.00356 R2N8 : 0.00102
σ : 0.651
deviance : 193.57
__
_____
C
peak time of C : 6.18
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.63 0.615 501 -3040 0.857 146000 -0.708 -890000 -0.131 5.94 995 10 -- --
170.11 0.612 3.22 -0.424 0.887 4.19 -0.734 -- -0.129 6 994.7 3 -- --
175.86 0.618 501 -3040 0.857 146000 -- -890000 -0.131 5.94 995 10 -- --
171.41 0.614 3.22 -0.43 0.884 4.24 -- -- -0.126 6.08 994.7 4 -- --
217.13 0.686 501 -3040 -- 146000 -- -890000 -0.101 -- 995 10 -- --
187.49 0.642 3.22 -0.399 0.851 -- -0.85 -- -0.138 6.04 -- -- -- --
189.22 0.644 3.22 -0.406 0.847 -- -- -- -0.134 6.16 -- -- -- --
211.72 0.681 3.23 -0.403 -- 3.84 -- -- -0.107 -- 994.7 4 -- --
176.27 0.622 3.21 -- 0.877 4.17 -- -- -0.078 6.11 994.7 4 -- --
226.4 0.703 3.24 -0.382 -- -- -- -- -0.115 -- -- -- -- --
193.57 0.651 3.21 -- 0.841 -- -- -- -0.0888 6.18 -- -- -- --
215.99 0.687 3.22 -- -- 3.78 -- -- -0.0622 -- 994.7 4 -- --
230.26 0.708 3.23 -- -- -- -- -- -0.0728 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.22 temperature 30.0 90 < th dose dependent rect. 2 7
6 169.66 atmosphere 995.0 10 > th dose independent sin 6 NA
11 169.77 atmosphere 995.0 90 > th dose independent rect. 9 17
16 170.05 temperature 25.0 90 < th dose independent rect. 2 6
19 170.19 atmosphere 995.0 30 < th dose independent sin 6 NA
20 170.19 atmosphere 995.0 90 < th dose independent rect. 14 1
21 170.19 atmosphere 995.0 10 < th dose independent rect. 15 1
149 170.19 atmosphere 995.0 90 < th dose dependent rect. 14 1
150 170.19 atmosphere 995.0 10 < th dose dependent rect. 15 1
279 170.20 atmosphere 995.0 10 < th dose dependent sin 6 NA
310 170.91 wind 5.0 90 < th dose independent rect. 2 6
330 171.42 atmosphere 995.0 10 > th dose independent rect. 9 17
334 171.54 atmosphere 995.0 90 > th dose independent rect. 11 15
340 171.67 wind 7.0 90 < th dose dependent rect. 2 6
347 171.82 humidity 60.0 270 > th dose independent rect. 21 15
348 171.82 temperature 30.0 10 > th dose dependent rect. 16 1
401 172.52 atmosphere 995.0 90 > th dose dependent rect. 2 6
415 172.69 atmosphere 995.0 4320 > th dose independent rect. 9 6
461 172.89 precipitation 0.1 90 < th dose independent rect. 2 6
462 172.89 precipitation 0.1 90 < th dose dependent rect. 2 6
484 173.11 temperature 10.0 90 > th dose independent rect. 2 6
487 173.11 humidity 50.0 90 > th dose independent rect. 2 6
489 173.11 atmosphere 995.0 90 > th dose independent rect. 2 6
490 173.11 atmosphere 1015.0 90 < th dose independent rect. 2 6
491 173.11 temperature 10.0 90 > th dose independent rect. 8 18
495 173.12 precipitation 0.1 90 < th dose independent rect. 8 18
496 173.12 precipitation 0.1 90 < th dose dependent rect. 8 18
503 173.19 temperature 20.0 270 < th dose independent rect. 3 2
541 173.34 wind 5.0 270 < th dose independent rect. 2 4
542 173.34 humidity 50.0 4320 > th dose independent rect. 3 7
548 173.39 radiation 40.0 90 < th dose independent rect. 2 6
552 173.44 wind 9.0 90 < th dose independent rect. 8 18
566 173.58 wind 1.0 270 > th dose independent rect. 11 10
622 173.85 precipitation 0.1 10 < th dose independent rect. 2 7
624 173.85 precipitation 0.1 10 < th dose dependent rect. 2 7
627 173.87 wind 9.0 90 < th dose dependent rect. 2 9
629 173.89 temperature 15.0 270 > th dose independent rect. 11 10
637 173.93 atmosphere 995.0 270 > th dose independent rect. 6 20
653 174.00 temperature 10.0 270 > th dose independent rect. 21 14
654 174.00 atmosphere 995.0 270 > th dose independent rect. 21 14
665 174.05 precipitation 0.1 10 < th dose independent rect. 9 17
667 174.05 precipitation 0.1 10 < th dose dependent rect. 9 17
671 174.09 wind 9.0 270 < th dose independent rect. 21 15
685 174.13 temperature 10.0 1440 > th dose independent rect. 3 7
688 174.13 atmosphere 995.0 1440 > th dose independent rect. 3 7
689 174.13 temperature 10.0 1440 > th dose independent rect. 10 17
717 174.20 wind 9.0 1440 < th dose independent rect. 3 6
733 174.23 humidity 50.0 90 > th dose independent rect. 8 18
739 174.26 atmosphere 995.0 1440 > th dose independent rect. 24 15
745 174.28 atmosphere 1015.0 90 < th dose independent rect. 8 18
772 174.32 precipitation 0.1 270 < th dose independent rect. 11 10
773 174.32 precipitation 0.1 270 < th dose dependent rect. 11 10
834 174.51 wind 9.0 270 < th dose independent rect. 12 9
836 174.53 precipitation 0.1 270 < th dose independent rect. 21 15
837 174.53 precipitation 0.1 270 < th dose dependent rect. 21 15
841 174.55 atmosphere 1000.0 270 > th dose independent rect. 6 8
844 174.56 atmosphere 1015.0 270 < th dose independent rect. 12 9
855 174.62 humidity 50.0 10 > th dose independent rect. 9 17
861 174.64 atmosphere 995.0 10 < th dose dependent no NA NA