Os12g0495600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0495600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.63 | 0.667 | 2.88 | -0.578 | 0.222 | -7.53 | -0.486 | -33.9 | -0.126 | 13 | 8.923 | 2 | 6.52 | -- |
| 231.25 | 0.708 | 2.98 | -0.351 | 0.31 | -0.767 | -1.06 | -- | -0.194 | 16.2 | 8.871 | 4 | 2.23 | -- |
| 202.61 | 0.663 | 2.88 | -0.593 | 0.225 | -7.52 | -- | -34 | -0.131 | 12.9 | 8.922 | 2 | 6.45 | -- |
| 224.41 | 0.702 | 2.93 | -0.517 | 0.236 | 2.4 | -- | -- | -0.149 | 13.7 | 8.5 | 4 | 1.6e-05 | -- |
| 205.7 | 0.668 | 2.88 | -0.611 | -- | -7.63 | -- | -34.1 | -0.135 | -- | 8.924 | 2 | 6.51 | -- |
| 228.22 | 0.708 | 2.94 | -0.531 | 0.249 | -- | -0.752 | -- | -0.154 | 14.7 | -- | -- | -- | -- |
| 230.1 | 0.71 | 2.94 | -0.55 | 0.246 | -- | -- | -- | -0.158 | 14.1 | -- | -- | -- | -- |
| 214.52 | 0.685 | 2.93 | -0.488 | -- | 4.19 | -- | -- | -0.141 | -- | 9.2 | 3 | 5.18 | -- |
| 231.42 | 0.712 | 2.92 | -- | 0.244 | 2.59 | -- | -- | -0.0905 | 13.8 | 8.5 | 4 | 1.6e-05 | -- |
| 233.73 | 0.714 | 2.94 | -0.56 | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
| 238.07 | 0.722 | 2.92 | -- | 0.256 | -- | -- | -- | -0.0972 | 14.1 | -- | -- | -- | -- |
| 216.99 | 0.686 | 2.93 | -- | -- | 4.28 | -- | -- | -0.114 | -- | 9.3 | 5 | 6.01 | -- |
| 242.01 | 0.726 | 2.93 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.30 | wind | 3 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 2 | 201.43 | wind | 9 | 30 | > th | dose independent | rect. | 18 | 8 |
| 19 | 201.44 | wind | 9 | 90 | > th | dose independent | rect. | 18 | 3 |
| 20 | 201.44 | wind | 9 | 10 | > th | dose independent | rect. | 18 | 4 |
| 40 | 201.48 | wind | 9 | 10 | > th | dose independent | rect. | 18 | 2 |
| 49 | 201.56 | wind | 9 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 55 | 203.48 | wind | 7 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 62 | 203.56 | wind | 7 | 10 | > th | dose dependent | rect. | 18 | 4 |
| 74 | 204.06 | wind | 9 | 90 | > th | dose dependent | rect. | 18 | 8 |
| 91 | 204.10 | wind | 9 | 90 | > th | dose dependent | rect. | 18 | 5 |
| 113 | 205.14 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 1 |
| 182 | 206.61 | wind | 9 | 10 | > th | dose independent | sin | 12 | NA |
| 183 | 206.76 | wind | 3 | 10 | > th | dose independent | rect. | 9 | 1 |
| 184 | 206.85 | wind | 9 | 10 | < th | dose independent | sin | 12 | NA |
| 189 | 207.29 | wind | 3 | 90 | > th | dose dependent | rect. | 9 | 1 |
| 221 | 207.55 | radiation | 1 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 247 | 207.92 | radiation | 1 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 338 | 210.45 | wind | 9 | 10 | > th | dose dependent | sin | 12 | NA |
| 343 | 210.90 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 2 |
| 403 | 211.37 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 406 | 211.38 | wind | 3 | 30 | > th | dose independent | rect. | 6 | 4 |
| 430 | 211.99 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 1 |
| 454 | 212.29 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 477 | 212.65 | temperature | 15 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 491 | 212.96 | temperature | 15 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 495 | 212.99 | radiation | 1 | 10 | > th | dose independent | rect. | 18 | 1 |
| 529 | 213.32 | temperature | 15 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 533 | 213.36 | temperature | 20 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 537 | 213.41 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 561 | 213.79 | temperature | 15 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 564 | 213.81 | wind | 9 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 587 | 213.89 | wind | 3 | 10 | > th | dose dependent | rect. | 17 | 18 |
| 590 | 213.93 | radiation | 40 | 270 | > th | dose independent | rect. | 15 | 1 |
| 634 | 214.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 656 | 214.32 | humidity | 90 | 270 | > th | dose independent | rect. | 6 | 1 |
| 660 | 214.42 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 669 | 214.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 696 | 214.64 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 727 | 214.86 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 7 | 4 |
| 737 | 214.90 | humidity | 50 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 743 | 214.94 | radiation | 10 | 30 | > th | dose independent | rect. | 10 | 23 |
| 750 | 215.02 | temperature | 15 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 756 | 215.04 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 764 | 215.10 | humidity | 50 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 767 | 215.11 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 769 | 215.12 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 786 | 215.19 | temperature | 15 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 817 | 215.33 | temperature | 25 | 30 | < th | dose independent | rect. | 12 | 7 |
| 818 | 215.33 | wind | 3 | 30 | > th | dose independent | rect. | 2 | 9 |
| 819 | 215.34 | temperature | 15 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 829 | 215.37 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 831 | 215.39 | humidity | 70 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 854 | 215.48 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 880 | 215.56 | humidity | 50 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 884 | 215.57 | humidity | 60 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 893 | 215.61 | humidity | 80 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 954 | 215.81 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 970 | 215.88 | humidity | 70 | 30 | > th | dose independent | rect. | 12 | 23 |
| 971 | 215.88 | humidity | 60 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 975 | 215.90 | wind | 5 | 30 | > th | dose independent | rect. | 17 | 18 |
| 997 | 215.98 | temperature | 15 | 4320 | < th | dose dependent | sin | 19 | NA |