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Os12g0492600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0353) R2 : 0.576
β1 : -1.98 (0.133) R2dD : 0.235 R2D : 0.073
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.37 (0.18) R2dE : 0.0698 R2E : -0.102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.59 (0.0789) R2dN8 : 0.566 R2N8 : 0.183
σ : 0.65
deviance : 194.69
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1.1
memory length : 1304
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.85 0.642 12.5 -1.93 0.263 -1.44 0.884 1.08 -1.6 1.87 1.149 1353 -- --
187.91 0.638 12.5 -1.94 0.281 -1.37 0.848 -- -1.58 1.83 1.1 1353 -- --
189.77 0.642 12.5 -1.96 0.266 -1.44 -- 1.08 -1.61 2.51 1.143 1353 -- --
190.76 0.643 12.5 -1.96 0.281 -1.36 -- -- -1.59 2.42 1.093 1346 -- --
193.88 0.649 12.5 -1.95 -- -1.44 -- 1.05 -1.59 -- 1.164 1304 -- --
212.33 0.683 12.5 -2.28 0.278 -- 0.769 -- -1.38 1.64 -- -- -- --
214.68 0.686 12.5 -2.3 0.278 -- -- -- -1.38 1.71 -- -- -- --
194.69 0.65 12.5 -1.98 -- -1.37 -- -- -1.59 -- 1.1 1304 -- --
287.53 0.79 12.5 -- 0.362 -1.47 -- -- -1.6 2.58 1.497 1385 -- --
219.38 0.692 12.5 -2.29 -- -- -- -- -1.38 -- -- -- -- --
354.41 0.881 12.4 -- 0.237 -- -- -- -1.13 1.42 -- -- -- --
290.1 0.793 12.5 -- -- -1.42 -- -- -1.45 -- 1.499 1350 -- --
357.86 0.883 12.4 -- -- -- -- -- -1.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 185.52 wind 3.0 4320 > th dose dependent rect. 20 1
2 185.92 wind 1.0 1440 < th dose dependent rect. 23 20
3 185.95 wind 5.0 4320 > th dose dependent rect. 20 8
10 186.43 wind 1.0 1440 < th dose dependent rect. 23 15
14 186.67 wind 5.0 4320 < th dose independent rect. 20 1
20 186.79 wind 7.0 4320 > th dose independent rect. 20 8
22 186.84 wind 7.0 4320 < th dose independent rect. 20 8
23 186.94 wind 5.0 4320 > th dose independent rect. 20 1
28 187.26 wind 1.0 1440 < th dose independent rect. 23 20
30 187.33 wind 1.0 1440 > th dose independent rect. 23 20
51 188.09 wind 1.0 1440 < th dose independent rect. 23 15
52 188.12 radiation 1.0 14400 < th dose dependent rect. 21 4
57 188.18 wind 1.0 1440 > th dose independent rect. 23 15
58 188.18 wind 1.0 1440 < th dose dependent rect. 9 23
65 188.30 wind 1.0 1440 < th dose dependent rect. 2 23
75 188.44 wind 1.0 1440 < th dose independent rect. 6 23
79 188.50 wind 1.0 1440 < th dose dependent rect. 12 20
81 188.51 wind 1.0 1440 < th dose dependent rect. 23 12
82 188.53 wind 1.0 1440 < th dose dependent rect. 6 23
85 188.57 wind 1.0 1440 < th dose dependent rect. 17 21
87 188.60 wind 1.0 1440 < th dose dependent rect. 12 23
94 188.66 wind 1.0 1440 < th dose dependent rect. 23 9
101 188.74 wind 1.0 1440 > th dose independent rect. 6 23
110 188.84 wind 1.0 1440 < th dose dependent rect. 4 23
122 188.93 wind 1.0 1440 < th dose dependent no NA NA
124 188.94 wind 1.0 1440 > th dose independent rect. 6 21
142 189.17 wind 1.0 1440 > th dose independent rect. 17 21
151 189.26 wind 1.0 1440 < th dose independent rect. 17 21
155 189.28 wind 1.0 1440 < th dose independent rect. 6 21
156 189.29 wind 1.0 1440 < th dose dependent sin 5 NA
174 189.45 wind 7.0 4320 < th dose independent rect. 20 5
177 189.46 wind 7.0 4320 > th dose independent rect. 20 5
186 189.50 wind 1.0 1440 > th dose independent rect. 23 4
191 189.51 wind 1.0 1440 < th dose independent rect. 4 23
205 189.66 wind 1.0 1440 < th dose independent rect. 12 23
210 189.76 wind 1.0 1440 < th dose dependent rect. 6 21
212 189.78 wind 1.0 1440 < th dose independent rect. 9 23
222 189.83 wind 1.0 1440 > th dose independent rect. 12 23
229 189.87 precipitation 0.1 14400 > th dose dependent rect. 20 1
236 189.92 wind 1.0 1440 < th dose independent no NA NA
239 189.98 wind 1.0 1440 > th dose independent no NA NA
240 189.98 wind 1.0 1440 < th dose independent rect. 23 6
270 190.15 atmosphere 1005.0 4320 < th dose independent rect. 21 2
277 190.20 wind 1.0 1440 > th dose independent rect. 9 23
287 190.27 wind 1.0 1440 < th dose dependent rect. 17 18
291 190.30 wind 1.0 1440 > th dose independent rect. 23 12
301 190.39 temperature 20.0 4320 > th dose independent rect. 21 2
326 190.52 wind 1.0 1440 < th dose independent rect. 23 12
328 190.52 wind 1.0 1440 < th dose independent rect. 2 23
338 190.57 atmosphere 995.0 14400 > th dose independent rect. 8 6
342 190.59 temperature 20.0 4320 < th dose independent rect. 21 2
400 190.80 wind 1.0 1440 > th dose independent rect. 2 23
402 190.82 wind 1.0 1440 < th dose dependent rect. 23 6
407 190.85 wind 1.0 1440 < th dose independent rect. 23 4
437 191.01 wind 1.0 1440 > th dose independent rect. 24 1
446 191.05 wind 1.0 1440 > th dose independent rect. 23 6
466 191.18 wind 1.0 1440 < th dose independent rect. 17 18
476 191.24 atmosphere 995.0 14400 > th dose independent rect. 12 2
496 191.35 wind 1.0 1440 < th dose independent rect. 9 20
513 191.45 precipitation 0.1 4320 < th dose independent rect. 17 1
516 191.45 precipitation 0.1 4320 < th dose dependent rect. 17 1
517 191.46 wind 1.0 1440 < th dose independent rect. 24 1
528 191.52 wind 1.0 1440 > th dose independent sin 5 NA
551 191.61 wind 1.0 1440 < th dose independent sin 4 NA
586 191.75 wind 7.0 14400 > th dose independent rect. 6 1
593 191.79 wind 1.0 1440 < th dose independent rect. 12 17
609 191.88 temperature 20.0 4320 > th dose independent rect. 13 10
657 192.07 atmosphere 995.0 14400 > th dose independent rect. 15 6
659 192.07 temperature 15.0 270 > th dose dependent rect. 17 16
674 192.14 atmosphere 995.0 14400 > th dose independent rect. 15 3
675 192.14 precipitation 0.1 14400 > th dose dependent rect. 17 1
679 192.15 atmosphere 1005.0 14400 > th dose independent rect. 23 1
683 192.16 temperature 20.0 4320 < th dose independent rect. 14 9
689 192.17 atmosphere 995.0 14400 > th dose independent rect. 8 13
702 192.20 atmosphere 995.0 14400 < th dose independent rect. 15 3
709 192.21 atmosphere 995.0 14400 > th dose independent rect. 11 10
710 192.21 atmosphere 995.0 14400 < th dose dependent rect. 14 1
776 192.25 atmosphere 995.0 14400 < th dose dependent rect. 15 4
889 192.46 wind 7.0 14400 < th dose independent rect. 6 1
942 192.53 wind 3.0 1440 < th dose dependent rect. 2 1
951 192.56 atmosphere 1005.0 14400 > th dose independent rect. 6 1
967 192.58 wind 9.0 4320 < th dose dependent rect. 20 1
980 192.62 atmosphere 1000.0 4320 < th dose independent rect. 11 1