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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0491800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ent-kaurene synthase 1A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.7 (0.0677) R2 : 0.402
β1 : 1.73 (0.304) R2dD : 0.074 R2D : 0.0895
β2 : 1.26 (0.165) R2dC : 0.0775 R2C : 0.07
β3 : 4.44 (0.339) R2dE : 0.298 R2E : 0.0323
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.4 (1.28) R2dD*E : 0.0908 R2D*E : 0.0326
γ1 : 0.667 (0.147) R2dN8 : 0.042 R2N8 : -0.0146
σ : 1.2
deviance : 665.36
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_____
C
peak time of C : 4.18
E
wheather : radiation
threshold : 0.92
memory length : 1441
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 19.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
665.57 1.21 3.7 1.69 1.27 4.39 -0.386 7.36 0.66 4.16 0.9599 1441 11 19.4
720.62 1.25 3.7 2.8 1.3 3.75 -0.167 -- 0.798 3.85 1 1434 11 19.4
665.36 1.2 3.7 1.73 1.26 4.44 -- 7.4 0.667 4.18 0.92 1441 11 19.5
720.72 1.25 3.7 2.8 1.3 3.72 -- -- 0.797 3.84 0.9934 1434 11 19.4
737.6 1.26 3.7 1.76 -- 4.52 -- 7.47 0.679 -- 0.9278 1471 11 19.4
915.43 1.42 3.7 2.04 1.18 -- -0.854 -- 0.392 4.07 -- -- -- --
917.5 1.42 3.7 2.05 1.17 -- -- -- 0.397 4.03 -- -- -- --
779.07 1.3 3.67 2.94 -- 3.66 -- -- 0.783 -- 1.15 1473 11 19.5
832.99 1.34 3.68 -- 1.41 3.47 -- -- 0.788 3.38 4.79 11406 11.3 19.2
992.68 1.47 3.7 2.1 -- -- -- -- 0.428 -- -- -- -- --
1028.67 1.5 3.75 -- 1.21 -- -- -- 0.168 4.01 -- -- -- --
820.71 1.33 3.61 -- -- 3.75 -- -- 0.791 -- 3.43 7675 11.1 19.1
1109.19 1.55 3.75 -- -- -- -- -- 0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 667.86 radiation 1.0 1440 < th dose independent rect. 11 19
8 674.84 radiation 1.0 1440 > th dose independent rect. 10 20
14 675.98 humidity 80.0 43200 < th dose independent rect. 13 4
15 676.27 humidity 80.0 43200 < th dose independent rect. 13 2
26 676.97 humidity 80.0 43200 > th dose independent rect. 14 1
27 676.99 humidity 80.0 43200 > th dose independent rect. 13 4
28 677.02 humidity 70.0 43200 > th dose dependent rect. 13 2
42 678.65 humidity 80.0 43200 > th dose independent rect. 11 7
55 679.78 humidity 80.0 43200 > th dose dependent rect. 13 6
71 680.85 precipitation 0.1 43200 > th dose dependent rect. 13 1
76 681.67 precipitation 0.1 43200 < th dose independent rect. 13 1
77 681.67 precipitation 0.1 43200 < th dose dependent rect. 13 1
82 681.78 precipitation 0.1 43200 > th dose independent rect. 13 1
83 681.87 humidity 90.0 43200 < th dose independent rect. 13 8
104 682.99 humidity 80.0 43200 > th dose dependent rect. 16 2
112 683.46 humidity 90.0 43200 > th dose dependent rect. 20 1
129 684.02 humidity 90.0 43200 > th dose independent rect. 17 5
130 684.03 humidity 90.0 43200 > th dose independent rect. 14 8
148 684.70 humidity 90.0 43200 > th dose independent rect. 20 1
194 686.21 temperature 25.0 43200 < th dose independent rect. 17 1
202 686.42 temperature 25.0 43200 > th dose independent rect. 17 1
206 686.57 temperature 25.0 43200 < th dose independent rect. 15 6
207 686.59 temperature 25.0 43200 > th dose independent rect. 15 6
211 686.62 temperature 30.0 43200 < th dose dependent rect. 14 1
212 686.63 temperature 25.0 43200 > th dose independent rect. 14 10
216 686.66 temperature 20.0 43200 > th dose dependent rect. 14 9
220 686.69 temperature 25.0 43200 < th dose independent rect. 14 10
221 686.69 temperature 20.0 43200 > th dose dependent rect. 16 6
233 686.77 radiation 1.0 1440 < th dose dependent rect. 9 21
234 686.78 radiation 1.0 1440 < th dose independent sin 15 NA
257 686.90 temperature 20.0 43200 > th dose dependent rect. 14 1
274 687.04 temperature 20.0 43200 > th dose dependent rect. 17 1
357 687.53 humidity 90.0 43200 > th dose dependent rect. 17 7
360 687.54 temperature 20.0 43200 > th dose dependent rect. 21 1
368 687.58 temperature 20.0 43200 > th dose dependent sin 16 NA
417 687.86 temperature 30.0 43200 > th dose independent rect. 14 1
424 687.89 temperature 30.0 43200 < th dose independent rect. 14 1
478 688.18 temperature 15.0 43200 > th dose dependent rect. 5 1
591 688.51 temperature 30.0 43200 < th dose dependent rect. 13 11
662 688.68 temperature 25.0 43200 < th dose independent sin 16 NA
674 688.70 temperature 25.0 43200 > th dose independent sin 16 NA
680 688.70 temperature 20.0 43200 > th dose dependent rect. 5 19
821 688.92 humidity 90.0 43200 < th dose independent sin 19 NA
849 688.97 temperature 20.0 43200 > th dose dependent no NA NA
850 688.97 humidity 80.0 43200 > th dose dependent sin 19 NA
885 689.03 humidity 90.0 43200 > th dose independent sin 18 NA
923 689.09 temperature 20.0 43200 > th dose dependent rect. 16 23
924 689.09 temperature 20.0 43200 > th dose dependent rect. 20 23
965 689.18 temperature 30.0 43200 < th dose dependent sin 17 NA