Os12g0490100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os12g0490100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.41 | 0.545 | 7.08 | 0.183 | 1.88 | -0.806 | 0.781 | 1.31 | -0.0941 | 18.1 | 76 | 1310 | -- | -- |
| 136.5 | 0.544 | 7.09 | 0.0463 | 1.87 | -0.73 | 0.652 | -- | -0.118 | 18.1 | 76 | 1303 | -- | -- |
| 135.89 | 0.543 | 7.07 | 0.169 | 1.89 | -0.804 | -- | 1.24 | -0.0919 | 18.1 | 75.9 | 1311 | -- | -- |
| 137.76 | 0.547 | 7.09 | 0.0315 | 1.88 | -0.726 | -- | -- | -0.126 | 18.1 | 76 | 1317 | -- | -- |
| 310.86 | 0.826 | 7.07 | -0.157 | -- | 0.523 | -- | 0.142 | -0.243 | -- | 75.9 | 1311 | -- | -- |
| 146.1 | 0.567 | 7.11 | -0.0469 | 1.92 | -- | 0.742 | -- | -0.196 | 18 | -- | -- | -- | -- |
| 147.44 | 0.569 | 7.1 | -0.0528 | 1.93 | -- | -- | -- | -0.193 | 17.9 | -- | -- | -- | -- |
| 305.41 | 0.817 | 7.07 | -0.159 | -- | 0.592 | -- | -- | -0.231 | -- | 73 | 4918 | -- | -- |
| 137.77 | 0.547 | 7.09 | -- | 1.88 | -0.735 | -- | -- | -0.133 | 18.1 | 75.99 | 1313 | -- | -- |
| 340.24 | 0.862 | 7.07 | -0.11 | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
| 147.51 | 0.568 | 7.1 | -- | 1.93 | -- | -- | -- | -0.188 | 17.9 | -- | -- | -- | -- |
| 306.07 | 0.817 | 7.07 | -- | -- | 0.588 | -- | -- | -0.213 | -- | 73 | 4918 | -- | -- |
| 340.56 | 0.861 | 7.07 | -- | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.36 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 4 | 132.06 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 9 | 132.28 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 46 | 133.68 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 53 | 133.81 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 66 | 134.04 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 22 |
| 94 | 134.47 | humidity | 80.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 99 | 134.55 | humidity | 90.0 | 720 | > th | dose independent | rect. | 15 | 9 |
| 109 | 134.61 | humidity | 80.0 | 720 | < th | dose independent | rect. | 15 | 16 |
| 111 | 134.63 | humidity | 80.0 | 720 | < th | dose independent | rect. | 15 | 7 |
| 114 | 134.64 | humidity | 80.0 | 720 | < th | dose independent | rect. | 15 | 12 |
| 162 | 134.89 | humidity | 70.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 175 | 134.96 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 200 | 135.14 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 224 | 135.21 | humidity | 80.0 | 720 | < th | dose independent | sin | 15 | NA |
| 269 | 135.50 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 284 | 135.58 | humidity | 90.0 | 720 | < th | dose independent | rect. | 18 | 7 |
| 293 | 135.61 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 310 | 135.68 | wind | 5.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 323 | 135.73 | humidity | 80.0 | 720 | > th | dose independent | sin | 15 | NA |
| 345 | 135.81 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 352 | 135.83 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 360 | 135.85 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 364 | 135.86 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 381 | 135.89 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 391 | 135.93 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 401 | 135.94 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 430 | 136.02 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 474 | 136.15 | humidity | 90.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 481 | 136.18 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 482 | 136.18 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 24 | 8 |
| 492 | 136.20 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 508 | 136.24 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 8 | 5 |
| 515 | 136.25 | wind | 3.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 518 | 136.26 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 8 |
| 625 | 136.50 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 636 | 136.53 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 644 | 136.56 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 647 | 136.57 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 665 | 136.60 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 21 | 20 |
| 668 | 136.60 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 11 |
| 679 | 136.63 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 13 | 20 |
| 706 | 136.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 708 | 136.69 | wind | 5.0 | 720 | > th | dose independent | rect. | 7 | 5 |
| 730 | 136.74 | wind | 5.0 | 720 | < th | dose independent | rect. | 4 | 9 |
| 868 | 137.05 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 903 | 137.13 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 963 | 137.26 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 10 | 8 |
| 989 | 137.29 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 6 | 13 |