Os12g0489400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0489400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.44 | 0.302 | 9.83 | -0.783 | 0.552 | -0.838 | -0.274 | -0.144 | -0.0565 | 10.5 | 0.9905 | 1422 | -- | -- |
| 41.28 | 0.299 | 9.83 | -0.777 | 0.568 | -0.814 | -0.315 | -- | -0.0507 | 10.6 | 1.04 | 1403 | -- | -- |
| 41.6 | 0.3 | 9.83 | -0.798 | 0.562 | -0.821 | -- | -0.118 | -0.0646 | 10.5 | 0.99 | 1406 | -- | -- |
| 41.6 | 0.3 | 9.83 | -0.781 | 0.573 | -0.83 | -- | -- | -0.0626 | 10.6 | 1.049 | 1399 | -- | -- |
| 49.8 | 0.329 | 9.83 | -0.815 | -- | -1.1 | -- | 0.48 | -0.0786 | -- | 1.67 | 1567 | -- | -- |
| 50.53 | 0.333 | 9.81 | -0.628 | 0.519 | -- | -0.354 | -- | 0.0434 | 10.4 | -- | -- | -- | -- |
| 51.03 | 0.335 | 9.81 | -0.643 | 0.521 | -- | -- | -- | 0.0422 | 10.3 | -- | -- | -- | -- |
| 49.95 | 0.329 | 9.84 | -0.8 | -- | -1.16 | -- | -- | -0.0799 | -- | 1.375 | 1562 | -- | -- |
| 57.2 | 0.352 | 9.81 | -- | 0.549 | -0.432 | -- | -- | 0.0351 | 10.5 | 7.909 | 1416 | -- | -- |
| 67.6 | 0.384 | 9.82 | -0.651 | -- | -- | -- | -- | 0.0406 | -- | -- | -- | -- | -- |
| 61.93 | 0.368 | 9.79 | -- | 0.525 | -- | -- | -- | 0.114 | 10.4 | -- | -- | -- | -- |
| 63.3 | 0.372 | 9.8 | -- | -- | -0.38 | -- | -- | 0.118 | -- | 7.74 | 7443 | -- | -- |
| 78.79 | 0.414 | 9.81 | -- | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.86 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 5 |
| 2 | 39.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 6 | 39.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 16 | 39.49 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 25 | 39.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 33 | 39.83 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 6 |
| 37 | 39.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 44 | 39.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 49 | 39.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 50 | 40.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 54 | 40.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 63 | 40.06 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 94 | 40.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 227 | 40.39 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 270 | 40.50 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 290 | 40.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 295 | 40.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 328 | 40.67 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 358 | 40.73 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 363 | 40.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 373 | 40.76 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 389 | 40.80 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 484 | 40.95 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 571 | 41.09 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 590 | 41.11 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 739 | 41.30 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 765 | 41.33 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 847 | 41.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 914 | 41.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 966 | 41.53 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 2 |