Os12g0488600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L4.
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Os12g0488600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.72 | 0.414 | 2.98 | 0.0533 | 0.168 | 7.52 | -0.00865 | 23.1 | -0.0565 | 7.82 | 10.01 | 48 | -- | -- |
| 79.76 | 0.416 | 2.96 | -0.0506 | 0.155 | 2.38 | 0.15 | -- | -0.0545 | 5.72 | 10.04 | 57 | -- | -- |
| 77.54 | 0.41 | 2.98 | 0.0448 | 0.167 | 7.47 | -- | 22.1 | -0.0581 | 7.76 | 10.31 | 47 | -- | -- |
| 79.36 | 0.415 | 2.96 | -0.0694 | 0.176 | 2.28 | -- | -- | -0.0647 | 7.06 | 9.945 | 52 | -- | -- |
| 79.05 | 0.414 | 2.99 | 0.0516 | -- | 7.57 | -- | 22.8 | -0.0535 | -- | 10.3 | 47 | -- | -- |
| 87.3 | 0.438 | 2.96 | -0.125 | 0.142 | -- | 0.0473 | -- | -0.0763 | 8.41 | -- | -- | -- | -- |
| 87.3 | 0.438 | 2.96 | -0.123 | 0.142 | -- | -- | -- | -0.0762 | 8.55 | -- | -- | -- | -- |
| 80.7 | 0.418 | 2.96 | -0.0501 | -- | 2.22 | -- | -- | -0.0481 | -- | 9.949 | 53 | -- | -- |
| 78.69 | 0.413 | 2.95 | -- | 0.17 | 2.32 | -- | -- | -0.0462 | 7.69 | 9.977 | 47 | -- | -- |
| 88.43 | 0.439 | 2.96 | -0.122 | -- | -- | -- | -- | -0.0749 | -- | -- | -- | -- | -- |
| 87.7 | 0.438 | 2.96 | -- | 0.141 | -- | -- | -- | -0.0625 | 8.61 | -- | -- | -- | -- |
| 80.25 | 0.417 | 2.96 | -- | -- | 2.24 | -- | -- | -0.0449 | -- | 9.967 | 47 | -- | -- |
| 88.82 | 0.44 | 2.96 | -- | -- | -- | -- | -- | -0.0613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.72 | radiation | 40 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 3 | 75.12 | radiation | 40 | 30 | > th | dose dependent | sin | 12 | NA |
| 4 | 75.56 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 5 | 75.69 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 18 | 75.73 | humidity | 60 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 31 | 75.76 | humidity | 60 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 36 | 76.11 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 7 |
| 38 | 76.20 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 56 | 76.64 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 4 |
| 61 | 76.74 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 90 | 76.96 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 116 | 76.96 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 160 | 77.54 | radiation | 40 | 30 | > th | dose independent | rect. | 13 | 21 |
| 198 | 77.71 | radiation | 40 | 30 | > th | dose independent | sin | 12 | NA |
| 223 | 78.03 | humidity | 60 | 90 | < th | dose dependent | rect. | 17 | 17 |
| 224 | 78.04 | humidity | 60 | 10 | < th | dose independent | rect. | 17 | 17 |
| 238 | 78.07 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 247 | 78.09 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |
| 308 | 78.09 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 338 | 78.09 | humidity | 60 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 425 | 78.22 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 524 | 78.53 | wind | 1 | 10 | < th | dose independent | sin | 22 | NA |
| 528 | 78.55 | wind | 1 | 10 | < th | dose dependent | sin | 22 | NA |
| 606 | 78.99 | wind | 1 | 10 | > th | dose independent | sin | 22 | NA |
| 608 | 79.01 | wind | 9 | 30 | > th | dose independent | rect. | 15 | 7 |
| 777 | 79.62 | wind | 9 | 90 | > th | dose independent | rect. | 13 | 2 |
| 804 | 79.70 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 9 |
| 843 | 79.77 | wind | 1 | 10 | < th | dose independent | rect. | 4 | 6 |
| 846 | 79.79 | wind | 9 | 30 | < th | dose independent | sin | 15 | NA |
| 861 | 79.91 | wind | 9 | 90 | > th | dose dependent | rect. | 13 | 2 |
| 897 | 80.02 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 953 | 80.14 | wind | 9 | 30 | > th | dose independent | sin | 15 | NA |
| 954 | 80.15 | wind | 9 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 989 | 80.25 | wind | 9 | 90 | > th | dose dependent | sin | 15 | NA |