Os12g0486900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os12g0486900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 204.52 | 0.672 | 2.99 | -0.416 | 0.0219 | -0.146 | -1.35 | -3.01 | 0.157 | 4.62 | 18.55 | 259 | -- | -- |
| 209.11 | 0.674 | 2.92 | 0.118 | 0.0264 | -0.36 | 0.64 | -- | 0.322 | 16.4 | 22.46 | 62 | -- | -- |
| 207.92 | 0.672 | 2.96 | -0.178 | 0.0412 | -0.185 | -- | -1.83 | 0.226 | 0.193 | 17.28 | 206 | -- | -- |
| 209.75 | 0.675 | 2.92 | 0.157 | 0.0276 | -0.358 | -- | -- | 0.331 | 16.3 | 21.9 | 67 | -- | -- |
| 208.01 | 0.672 | 2.95 | -0.142 | -- | -0.252 | -- | -1.81 | 0.244 | -- | 16.21 | 178 | -- | -- |
| 211.56 | 0.682 | 2.93 | 0.0758 | 0.115 | -- | -0.366 | -- | 0.27 | 3.93 | -- | -- | -- | -- |
| 211.9 | 0.682 | 2.93 | 0.0804 | 0.115 | -- | -- | -- | 0.272 | 2.92 | -- | -- | -- | -- |
| 209.78 | 0.675 | 2.92 | 0.15 | -- | -0.334 | -- | -- | 0.326 | -- | 21.9 | 85 | -- | -- |
| 210.36 | 0.676 | 2.92 | -- | 0.00801 | -0.311 | -- | -- | 0.307 | 16.3 | 22 | 74 | -- | -- |
| 212.65 | 0.681 | 2.93 | 0.0853 | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
| 212.07 | 0.681 | 2.93 | -- | 0.116 | -- | -- | -- | 0.263 | 2.92 | -- | -- | -- | -- |
| 210.36 | 0.676 | 2.92 | -- | -- | -0.305 | -- | -- | 0.306 | -- | 22 | 85 | -- | -- |
| 212.85 | 0.681 | 2.93 | -- | -- | -- | -- | -- | 0.265 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.29 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 19 | 3 |
| 6 | 188.29 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 19 | 3 |
| 48 | 189.57 | wind | 1.0 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 55 | 193.08 | wind | 1.0 | 90 | < th | dose dependent | rect. | 14 | 8 |
| 58 | 193.90 | wind | 1.0 | 90 | < th | dose independent | rect. | 14 | 8 |
| 61 | 194.63 | wind | 1.0 | 90 | < th | dose independent | rect. | 17 | 4 |
| 62 | 194.68 | wind | 1.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 80 | 196.56 | wind | 1.0 | 90 | < th | dose dependent | rect. | 14 | 14 |
| 82 | 196.69 | wind | 1.0 | 90 | < th | dose dependent | sin | 17 | NA |
| 84 | 197.08 | wind | 1.0 | 90 | < th | dose independent | rect. | 14 | 14 |
| 98 | 197.53 | wind | 1.0 | 90 | < th | dose dependent | rect. | 20 | 8 |
| 107 | 197.92 | wind | 1.0 | 90 | < th | dose dependent | rect. | 1 | 3 |
| 115 | 198.39 | wind | 1.0 | 90 | < th | dose independent | rect. | 1 | 3 |
| 117 | 198.57 | wind | 1.0 | 90 | < th | dose independent | sin | 17 | NA |
| 119 | 198.64 | wind | 1.0 | 90 | < th | dose independent | rect. | 20 | 8 |
| 127 | 198.96 | wind | 1.0 | 90 | < th | dose independent | rect. | 7 | 21 |
| 156 | 200.55 | wind | 1.0 | 90 | > th | dose independent | sin | 17 | NA |
| 173 | 201.11 | wind | 1.0 | 30 | < th | dose dependent | rect. | 14 | 2 |
| 175 | 201.12 | wind | 1.0 | 30 | < th | dose independent | rect. | 14 | 2 |
| 192 | 201.18 | humidity | 90.0 | 90 | > th | dose independent | rect. | 14 | 1 |
| 195 | 201.18 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 209 | 201.32 | wind | 1.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 211 | 201.35 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 14 | 1 |
| 214 | 201.35 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 258 | 202.29 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 20 | 20 |
| 263 | 202.35 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 265 | 202.38 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 343 | 203.03 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 21 |
| 409 | 203.51 | humidity | 60.0 | 30 | > th | dose independent | rect. | 20 | 21 |
| 413 | 203.54 | wind | 1.0 | 30 | < th | dose independent | rect. | 10 | 12 |
| 439 | 203.65 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 441 | 203.66 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 442 | 203.67 | radiation | 20.0 | 270 | < th | dose independent | rect. | 10 | 1 |
| 456 | 203.77 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 468 | 203.83 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 507 | 204.03 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 552 | 204.15 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 567 | 204.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 576 | 204.21 | wind | 7.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 579 | 204.21 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 584 | 204.22 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 4 | 7 |
| 591 | 204.24 | humidity | 60.0 | 10 | > th | dose independent | rect. | 12 | 5 |
| 606 | 204.28 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 612 | 204.29 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 637 | 204.34 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 12 | 5 |
| 640 | 204.35 | wind | 1.0 | 90 | < th | dose independent | rect. | 24 | 8 |
| 643 | 204.36 | temperature | 25.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 683 | 204.43 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 12 | 5 |
| 686 | 204.44 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 702 | 204.47 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 708 | 204.47 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 716 | 204.49 | wind | 1.0 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 718 | 204.50 | humidity | 60.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 749 | 204.54 | wind | 3.0 | 90 | < th | dose dependent | rect. | 20 | 20 |
| 751 | 204.55 | humidity | 60.0 | 270 | > th | dose independent | rect. | 11 | 3 |
| 775 | 204.58 | temperature | 25.0 | 30 | < th | dose independent | rect. | 21 | 19 |
| 810 | 204.64 | temperature | 25.0 | 720 | > th | dose independent | rect. | 23 | 14 |
| 836 | 204.67 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 856 | 204.70 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 859 | 204.70 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 865 | 204.71 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 13 |
| 872 | 204.72 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 912 | 204.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 914 | 204.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 924 | 204.78 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 930 | 204.78 | temperature | 20.0 | 270 | > th | dose dependent | no | NA | NA |
| 937 | 204.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 982 | 204.83 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 992 | 204.84 | wind | 1.0 | 90 | < th | dose independent | rect. | 14 | 18 |