Os12g0486600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium dependent protein kinase.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0486600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Calcium dependent protein kinase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.57 | 0.457 | 3.12 | -0.0014 | 0.151 | 4.66 | -0.248 | -8.19 | -0.0368 | 3.21 | 0.7064 | 120 | 22 | 0.678 |
| 94.85 | 0.454 | 3.11 | -0.00764 | 0.148 | 6.06 | -0.373 | -- | -0.0349 | 2.84 | 0.6145 | 185 | 22 | 0.517 |
| 94.35 | 0.452 | 3.12 | -0.00229 | 0.152 | 4.66 | -- | -8.56 | -0.0373 | 3.35 | 0.7001 | 128 | 22 | 0.667 |
| 94.71 | 0.453 | 3.11 | 0.0555 | 0.156 | 6.44 | -- | -- | -0.0393 | 3.42 | 0.3391 | 128 | 22.1 | 0.119 |
| 95.64 | 0.455 | 3.12 | 0.00325 | -- | 4.72 | -- | -8.48 | -0.0332 | -- | 0.7024 | 131 | 22 | 0.662 |
| 135.35 | 0.545 | 3.12 | -0.0111 | 0.196 | -- | -0.365 | -- | -0.0659 | 2.18 | -- | -- | -- | -- |
| 135.84 | 0.546 | 3.12 | -0.000761 | 0.197 | -- | -- | -- | -0.0639 | 2.4 | -- | -- | -- | -- |
| 96.1 | 0.457 | 3.12 | 0.0649 | -- | 6.5 | -- | -- | -0.0345 | -- | 0.3537 | 134 | 22.1 | 0.0115 |
| 94.79 | 0.453 | 3.12 | -- | 0.158 | 6.43 | -- | -- | -0.0453 | 3.2 | 0.3455 | 135 | 22.1 | 0.0144 |
| 138.13 | 0.549 | 3.12 | 0.00756 | -- | -- | -- | -- | -0.059 | -- | -- | -- | -- | -- |
| 135.84 | 0.545 | 3.12 | -- | 0.197 | -- | -- | -- | -0.0638 | 2.4 | -- | -- | -- | -- |
| 96.22 | 0.457 | 3.12 | -- | -- | 6.48 | -- | -- | -0.0417 | -- | 0.3605 | 139 | 22.1 | 0.0293 |
| 138.13 | 0.549 | 3.12 | -- | -- | -- | -- | -- | -0.0599 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.41 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 116.88 | wind | 1 | 30 | < th | dose dependent | rect. | 23 | 1 |
| 5 | 117.84 | wind | 1 | 270 | < th | dose dependent | rect. | 21 | 2 |
| 20 | 119.25 | wind | 1 | 270 | < th | dose independent | rect. | 22 | 1 |
| 21 | 119.42 | humidity | 60 | 270 | < th | dose independent | rect. | 18 | 1 |
| 23 | 119.46 | humidity | 60 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 25 | 120.45 | wind | 1 | 30 | < th | dose dependent | rect. | 14 | 10 |
| 29 | 122.23 | temperature | 30 | 270 | > th | dose dependent | rect. | 18 | 1 |
| 54 | 123.52 | wind | 1 | 30 | < th | dose dependent | rect. | 12 | 12 |
| 92 | 126.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 221 | 129.12 | humidity | 80 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 227 | 129.19 | temperature | 25 | 30 | > th | dose independent | rect. | 21 | 1 |
| 241 | 129.33 | humidity | 70 | 270 | < th | dose dependent | rect. | 19 | 12 |
| 357 | 129.98 | wind | 1 | 30 | < th | dose dependent | sin | 18 | NA |
| 386 | 130.12 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 1 |
| 468 | 130.52 | wind | 3 | 30 | < th | dose dependent | sin | 15 | NA |
| 508 | 130.69 | humidity | 90 | 10 | < th | dose independent | rect. | 21 | 2 |
| 509 | 130.69 | humidity | 90 | 10 | < th | dose dependent | rect. | 21 | 2 |
| 518 | 130.71 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 6 |
| 526 | 130.72 | temperature | 20 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 561 | 130.76 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 563 | 130.76 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 592 | 130.81 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 4 |
| 614 | 130.83 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 726 | 130.98 | wind | 7 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 836 | 131.23 | humidity | 80 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 913 | 131.40 | wind | 7 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 937 | 131.44 | wind | 7 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 949 | 131.46 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 955 | 131.47 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 2 |