Os12g0485900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0485900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.91 | 0.477 | 3.3 | 0.189 | 0.257 | 0.27 | -0.0498 | 1.32 | -0.0233 | 7.45 | 89 | 4779 | -- | -- |
| 104.99 | 0.477 | 3.29 | 0.158 | 0.246 | 0.377 | -0.188 | -- | -0.05 | 7.35 | 88 | 4301 | -- | -- |
| 102.61 | 0.472 | 3.3 | 0.211 | 0.231 | 0.263 | -- | 1.4 | -0.0219 | 7.61 | 89.38 | 5912 | -- | -- |
| 104.95 | 0.477 | 3.3 | 0.103 | 0.223 | 0.358 | -- | -- | -0.0534 | 7.59 | 88 | 4299 | -- | -- |
| 105.46 | 0.478 | 3.31 | 0.195 | -- | 0.265 | -- | 1.36 | -0.0178 | -- | 89 | 5849 | -- | -- |
| 106.45 | 0.484 | 3.29 | 0.097 | 0.23 | -- | -0.17 | -- | 0.00792 | 7.44 | -- | -- | -- | -- |
| 106.52 | 0.483 | 3.28 | 0.0935 | 0.229 | -- | -- | -- | 0.00844 | 7.61 | -- | -- | -- | -- |
| 107.72 | 0.483 | 3.3 | 0.102 | -- | 0.353 | -- | -- | -0.0394 | -- | 86.24 | 4299 | -- | -- |
| 105.19 | 0.478 | 3.3 | -- | 0.227 | 0.348 | -- | -- | -0.0517 | 7.58 | 85.68 | 4261 | -- | -- |
| 109.35 | 0.489 | 3.29 | 0.0967 | -- | -- | -- | -- | 0.0119 | -- | -- | -- | -- | -- |
| 106.76 | 0.483 | 3.29 | -- | 0.23 | -- | -- | -- | -0.00197 | 7.58 | -- | -- | -- | -- |
| 107.98 | 0.484 | 3.3 | -- | -- | 0.35 | -- | -- | -0.0437 | -- | 84.99 | 4290 | -- | -- |
| 109.59 | 0.489 | 3.29 | -- | -- | -- | -- | -- | 0.00117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.70 | radiation | 10 | 10 | > th | dose independent | rect. | 6 | 1 |
| 27 | 98.70 | radiation | 10 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 69 | 101.19 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 1 |
| 70 | 101.38 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 1 |
| 71 | 101.85 | radiation | 10 | 30 | > th | dose independent | sin | 11 | NA |
| 72 | 101.91 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 93 | 102.11 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 94 | 102.12 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 95 | 102.15 | atmosphere | 1010 | 10 | < th | dose independent | sin | 6 | NA |
| 96 | 102.18 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 100 | 102.22 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 102 | 102.23 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 108 | 102.31 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 14 |
| 109 | 102.31 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 14 |
| 110 | 102.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 113 | 102.35 | wind | 3 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 114 | 102.35 | radiation | 10 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 136 | 102.43 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 146 | 102.45 | humidity | 90 | 4320 | < th | dose dependent | sin | 6 | NA |
| 149 | 102.45 | humidity | 80 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 165 | 102.48 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 166 | 102.48 | humidity | 50 | 4320 | > th | dose dependent | sin | 5 | NA |
| 173 | 102.49 | humidity | 80 | 4320 | < th | dose independent | rect. | 3 | 8 |
| 180 | 102.51 | humidity | 70 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 198 | 102.52 | humidity | 70 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 285 | 102.60 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 315 | 102.63 | humidity | 90 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 328 | 102.64 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 347 | 102.66 | humidity | 80 | 4320 | < th | dose independent | rect. | 23 | 14 |
| 352 | 102.67 | radiation | 10 | 30 | < th | dose independent | sin | 11 | NA |
| 373 | 102.69 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 6 |
| 401 | 102.71 | humidity | 80 | 4320 | < th | dose independent | sin | 6 | NA |
| 448 | 102.75 | humidity | 80 | 4320 | > th | dose independent | sin | 6 | NA |
| 452 | 102.75 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 19 |
| 463 | 102.76 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 490 | 102.77 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 5 |
| 528 | 102.79 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 7 |
| 559 | 102.80 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 653 | 102.83 | atmosphere | 995 | 720 | > th | dose independent | rect. | 23 | 16 |
| 715 | 102.86 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 3 | 9 |
| 813 | 102.88 | temperature | 25 | 30 | > th | dose dependent | rect. | 16 | 19 |
| 933 | 102.93 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 950 | 102.94 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 23 | 13 |