Os12g0485600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid/polyamine transporter II family protein.
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Os12g0485600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid/polyamine transporter II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.2 | 0.574 | 5.91 | 0.506 | 0.66 | 1.33 | 0.323 | -0.252 | 0.498 | 20.6 | 10.01 | 1379 | -- | -- |
| 149.32 | 0.569 | 5.91 | 0.525 | 0.659 | 1.33 | 0.293 | -- | 0.498 | 20.6 | 10.01 | 1378 | -- | -- |
| 149.53 | 0.57 | 5.91 | 0.5 | 0.661 | 1.33 | -- | -0.213 | 0.498 | 20.5 | 10.01 | 1376 | -- | -- |
| 149.58 | 0.57 | 5.91 | 0.524 | 0.653 | 1.33 | -- | -- | 0.499 | 20.5 | 10.02 | 1372 | -- | -- |
| 159.7 | 0.589 | 5.89 | 0.507 | -- | 1.63 | -- | -0.0879 | 0.487 | -- | 10 | 1209 | -- | -- |
| 197.58 | 0.659 | 5.82 | 0.957 | 0.776 | -- | 0.555 | -- | 0.892 | 21.3 | -- | -- | -- | -- |
| 198.67 | 0.66 | 5.82 | 0.938 | 0.776 | -- | -- | -- | 0.892 | 21.2 | -- | -- | -- | -- |
| 159.68 | 0.589 | 5.89 | 0.516 | -- | 1.63 | -- | -- | 0.492 | -- | 10 | 1209 | -- | -- |
| 156.63 | 0.583 | 5.91 | -- | 0.59 | 1.45 | -- | -- | 0.456 | 20.5 | 10 | 1364 | -- | -- |
| 233.61 | 0.714 | 5.8 | 0.941 | -- | -- | -- | -- | 0.889 | -- | -- | -- | -- | -- |
| 221.86 | 0.697 | 5.85 | -- | 0.776 | -- | -- | -- | 0.788 | 21.3 | -- | -- | -- | -- |
| 166.4 | 0.601 | 5.91 | -- | -- | 1.75 | -- | -- | 0.434 | -- | 10 | 1209 | -- | -- |
| 256.95 | 0.748 | 5.82 | -- | -- | -- | -- | -- | 0.784 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.78 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 19 | 138.87 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 20 | 138.88 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 32 | 139.27 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 64 | 139.96 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 68 | 140.09 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 69 | 140.10 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 70 | 140.10 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 75 | 140.12 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 93 | 140.42 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 137 | 141.08 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 148 | 141.25 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 168 | 141.37 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 175 | 141.43 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 187 | 141.54 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 199 | 141.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 200 | 141.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 202 | 141.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 203 | 141.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 212 | 141.75 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 238 | 142.03 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 241 | 142.05 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 245 | 142.11 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 249 | 142.14 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 250 | 142.14 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 14 |
| 256 | 142.15 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 269 | 142.16 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 270 | 142.17 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 271 | 142.17 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 281 | 142.21 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 311 | 142.31 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 362 | 142.49 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 386 | 142.55 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 402 | 142.64 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 415 | 142.65 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 471 | 142.81 | temperature | 30.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 493 | 142.84 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 502 | 142.85 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 512 | 142.86 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 624 | 142.97 | temperature | 30.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 647 | 143.01 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 22 | 21 |
| 658 | 143.02 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 674 | 143.02 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 742 | 143.07 | temperature | 25.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 848 | 143.23 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |