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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0484900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Growth-regulating factor 7.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0204) R2 : 0.00189
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0398 (0.0429) R2dN8 : 0.00244 R2N8 : 0.00189
σ : 0.383
deviance : 67.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.04 0.364 3.26 0.0433 0.266 0.347 -0.221 0.304 0.00213 6.74 0.1647 3120 -- --
60.07 0.361 3.27 0.0376 0.269 0.414 -0.196 -- 0.00359 6.74 0.2612 3042 -- --
60.16 0.361 3.26 0.04 0.267 0.348 -- 0.289 0.0025 6.76 0.1725 3110 -- --
60.18 0.361 3.27 0.0312 0.265 0.416 -- -- 0.00385 6.74 0.2604 3042 -- --
63.83 0.372 3.27 0.0407 -- 0.365 -- 0.276 0.00875 -- 0.07092 3037 -- --
63.01 0.372 3.27 0.152 0.269 -- -0.191 -- -0.0284 6.74 -- -- -- --
63.1 0.372 3.27 0.149 0.268 -- -- -- -0.0279 6.71 -- -- -- --
63.67 0.372 3.27 0.015 -- 0.464 -- -- 0.0097 -- 4.838e-07 2461 -- --
60.05 0.361 3.27 -- 0.264 0.459 -- -- -0.00236 6.8 -2.569e-06 2456 -- --
66.86 0.382 3.28 0.155 -- -- -- -- -0.0226 -- -- -- -- --
63.69 0.373 3.28 -- 0.27 -- -- -- -0.0445 6.67 -- -- -- --
63.67 0.372 3.27 -- -- 0.467 -- -- 0.00697 -- -0.01422 2461 -- --
67.5 0.383 3.28 -- -- -- -- -- -0.0398 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.29 radiation 1.0 43200 < th dose dependent rect. 3 1
2 56.81 humidity 80.0 10 < th dose independent rect. 7 1
4 56.90 radiation 10.0 30 > th dose independent rect. 7 1
7 57.18 humidity 80.0 10 < th dose independent rect. 23 9
12 57.32 atmosphere 1005.0 90 > th dose dependent rect. 2 1
15 57.50 radiation 1.0 4320 < th dose dependent rect. 3 1
21 57.61 wind 9.0 1440 < th dose independent rect. 3 1
22 57.61 temperature 10.0 1440 > th dose independent rect. 3 1
25 57.61 temperature 30.0 1440 < th dose independent rect. 3 1
29 57.61 humidity 50.0 1440 > th dose independent rect. 3 1
38 57.61 atmosphere 995.0 1440 > th dose independent rect. 3 1
39 57.61 radiation 1.0 1440 < th dose independent rect. 3 1
59 57.61 temperature 10.0 1440 > th dose independent rect. 4 23
74 57.73 temperature 20.0 30 > th dose dependent rect. 2 1
91 57.77 temperature 20.0 30 > th dose independent rect. 2 1
92 57.77 atmosphere 1005.0 30 > th dose independent rect. 2 1
95 57.79 wind 3.0 30 < th dose dependent rect. 2 1
97 57.80 temperature 25.0 30 < th dose independent rect. 2 1
101 57.83 wind 3.0 30 < th dose independent rect. 2 1
107 57.87 humidity 80.0 30 > th dose independent rect. 2 1
109 57.88 temperature 10.0 30 > th dose independent rect. 2 1
112 57.88 humidity 50.0 30 > th dose independent rect. 2 1
116 57.88 atmosphere 1010.0 30 < th dose independent rect. 2 1
118 57.88 radiation 1.0 30 < th dose independent rect. 2 1
123 57.88 precipitation 0.1 30 < th dose independent rect. 2 1
124 57.88 temperature 10.0 30 > th dose independent rect. 3 23
125 57.88 radiation 1.0 30 < th dose dependent rect. 2 1
130 57.88 precipitation 0.1 30 < th dose dependent rect. 2 1
131 57.89 humidity 50.0 30 > th dose dependent rect. 2 1
136 57.94 atmosphere 1000.0 30 > th dose independent rect. 3 23
143 58.04 radiation 10.0 10 > th dose independent rect. 16 16
144 58.08 atmosphere 1015.0 30 < th dose dependent rect. 2 1
145 58.09 temperature 30.0 30 < th dose dependent rect. 2 1
159 58.28 temperature 25.0 30 > th dose independent rect. 7 1
160 58.31 wind 1.0 30 > th dose independent rect. 2 1
176 58.57 precipitation 0.1 10 < th dose independent rect. 3 23
177 58.57 precipitation 0.1 10 < th dose dependent rect. 3 23
184 58.65 wind 9.0 30 < th dose independent rect. 3 23
224 58.96 atmosphere 1005.0 30 > th dose independent rect. 7 1
249 59.19 humidity 50.0 30 > th dose independent rect. 3 23
252 59.27 precipitation 0.1 270 > th dose independent rect. 1 3
265 59.39 precipitation 0.1 270 > th dose dependent rect. 23 6
269 59.41 humidity 80.0 14400 < th dose independent rect. 7 1
286 59.50 humidity 90.0 90 < th dose independent rect. 2 1
297 59.56 wind 3.0 14400 > th dose dependent rect. 9 4
307 59.59 precipitation 0.1 720 < th dose independent rect. 23 16
314 59.59 precipitation 0.1 720 < th dose dependent rect. 23 16
316 59.60 precipitation 0.1 720 < th dose independent rect. 3 17
319 59.60 precipitation 0.1 720 < th dose dependent rect. 3 17
349 59.68 wind 5.0 14400 < th dose independent rect. 9 4
350 59.68 atmosphere 995.0 30 > th dose independent rect. 8 23
366 59.72 wind 5.0 14400 > th dose independent rect. 9 4
367 59.72 precipitation 0.1 270 > th dose dependent sin 7 NA
371 59.72 wind 7.0 14400 < th dose dependent rect. 9 3
373 59.73 precipitation 0.1 720 < th dose independent rect. 17 16
376 59.73 humidity 80.0 14400 < th dose dependent rect. 5 3
377 59.73 precipitation 0.1 720 < th dose dependent rect. 17 16
382 59.75 precipitation 0.1 720 < th dose independent rect. 13 16
383 59.75 precipitation 0.1 720 < th dose dependent rect. 13 16
387 59.77 temperature 20.0 30 > th dose dependent rect. 7 1
393 59.79 precipitation 0.1 270 > th dose independent sin 6 NA
394 59.79 wind 3.0 43200 < th dose independent rect. 9 1
396 59.79 precipitation 0.1 4320 > th dose dependent rect. 19 4
432 59.82 radiation 10.0 10 > th dose independent sin 11 NA
433 59.82 wind 3.0 43200 > th dose independent rect. 9 1
440 59.83 precipitation 0.1 10 < th dose independent rect. 8 23
441 59.83 humidity 90.0 90 < th dose dependent rect. 2 6
442 59.83 precipitation 0.1 10 < th dose dependent rect. 8 23
445 59.85 precipitation 0.1 270 < th dose independent sin 7 NA
447 59.85 precipitation 0.1 270 < th dose dependent sin 7 NA
460 59.87 humidity 90.0 720 > th dose dependent rect. 20 1
464 59.88 wind 1.0 30 > th dose independent rect. 7 1
476 59.90 precipitation 0.1 4320 > th dose independent rect. 19 3
487 59.91 radiation 1.0 90 < th dose dependent rect. 5 11
489 59.92 precipitation 0.1 4320 < th dose independent rect. 19 3
494 59.92 precipitation 0.1 4320 < th dose dependent rect. 19 3
505 59.93 wind 7.0 14400 < th dose dependent rect. 11 1
519 59.95 precipitation 0.1 720 < th dose independent rect. 17 8
527 59.95 precipitation 0.1 720 < th dose dependent rect. 17 8
537 59.98 precipitation 0.1 720 < th dose independent rect. 3 8
544 59.98 precipitation 0.1 720 < th dose dependent rect. 3 8
556 60.00 humidity 90.0 720 > th dose dependent rect. 18 5
560 60.01 precipitation 0.1 4320 > th dose independent rect. 17 6
566 60.02 humidity 90.0 10 < th dose dependent rect. 7 1
571 60.03 precipitation 0.1 4320 < th dose independent rect. 17 6
574 60.03 precipitation 0.1 4320 < th dose dependent rect. 17 6
575 60.04 wind 3.0 43200 < th dose dependent rect. 9 1
577 60.04 radiation 1.0 90 < th dose dependent rect. 5 2
600 60.07 precipitation 0.1 720 < th dose independent rect. 16 23
607 60.07 precipitation 0.1 720 < th dose dependent rect. 16 23
615 60.08 humidity 80.0 14400 < th dose dependent rect. 22 11
631 60.10 atmosphere 995.0 30 > th dose dependent rect. 7 1
636 60.10 radiation 1.0 90 < th dose dependent rect. 5 5
643 60.11 precipitation 0.1 4320 > th dose independent rect. 12 11
644 60.11 precipitation 0.1 4320 < th dose independent rect. 12 11
655 60.11 precipitation 0.1 4320 < th dose dependent rect. 12 11
658 60.12 wind 1.0 43200 > th dose independent rect. 19 1
666 60.12 precipitation 0.1 4320 > th dose dependent rect. 12 11
696 60.15 atmosphere 995.0 720 > th dose independent rect. 23 16
729 60.17 wind 7.0 30 < th dose independent rect. 7 1
738 60.18 wind 9.0 1440 < th dose independent rect. 8 1
741 60.18 temperature 10.0 1440 > th dose independent rect. 8 1
746 60.18 humidity 50.0 1440 > th dose independent rect. 8 1
748 60.18 atmosphere 995.0 1440 > th dose independent rect. 8 1
751 60.18 atmosphere 1015.0 1440 < th dose independent rect. 8 1
761 60.18 temperature 10.0 1440 > th dose independent rect. 9 23
764 60.18 wind 9.0 10 < th dose dependent rect. 7 1
766 60.18 wind 1.0 43200 < th dose dependent rect. 1 2
784 60.19 precipitation 0.1 4320 > th dose dependent rect. 13 1
793 60.20 temperature 10.0 30 > th dose independent rect. 7 1
795 60.20 temperature 30.0 30 < th dose independent rect. 7 1
796 60.20 humidity 50.0 30 > th dose independent rect. 7 1
798 60.20 atmosphere 995.0 30 > th dose independent rect. 7 1
799 60.20 atmosphere 1010.0 30 < th dose independent rect. 7 1
801 60.20 radiation 10.0 43200 > th dose independent rect. 8 1
828 60.20 temperature 10.0 30 > th dose independent rect. 8 23
840 60.21 precipitation 0.1 30 < th dose independent rect. 7 1
851 60.21 wind 9.0 30 < th dose independent rect. 8 23
852 60.21 precipitation 0.1 30 < th dose dependent rect. 7 1
864 60.22 wind 3.0 43200 > th dose independent rect. 19 4
866 60.22 precipitation 0.1 720 < th dose independent rect. 21 8
873 60.22 precipitation 0.1 720 < th dose dependent rect. 21 8
898 60.24 wind 5.0 43200 < th dose independent rect. 19 1
913 60.24 wind 5.0 43200 < th dose dependent rect. 19 2
930 60.25 precipitation 0.1 4320 > th dose dependent sin 15 NA
940 60.25 precipitation 0.1 4320 > th dose dependent rect. 4 19
978 60.27 radiation 40.0 30 < th dose independent rect. 7 1
980 60.27 wind 3.0 43200 < th dose independent rect. 19 4
994 60.28 wind 5.0 14400 < th dose independent sin 2 NA
995 60.28 radiation 20.0 10 < th dose independent rect. 7 1