Os12g0484600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nodulin-like domain containing protein.
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Os12g0484600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nodulin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.86 | 0.338 | 12.2 | 1.65 | 0.218 | -0.772 | 1.19 | -1.83 | 0.32 | 20.3 | 77.62 | 1210 | -- | -- |
| 54.66 | 0.344 | 12.2 | 1.83 | 0.237 | -0.773 | 1.07 | -- | 0.363 | 19.8 | 75.01 | 1207 | -- | -- |
| 54.56 | 0.344 | 12.2 | 1.59 | 0.212 | -0.693 | -- | -2.19 | 0.312 | 17.4 | 78 | 1367 | -- | -- |
| 57.2 | 0.352 | 12.2 | 1.78 | 0.471 | -0.746 | -- | -- | 0.374 | 18.4 | 75.17 | 2127 | -- | -- |
| 56.89 | 0.351 | 12.2 | 1.57 | -- | -0.745 | -- | -2.23 | 0.308 | -- | 79 | 1361 | -- | -- |
| 65.34 | 0.379 | 12.2 | 1.73 | 0.24 | -- | 1 | -- | 0.311 | 18.6 | -- | -- | -- | -- |
| 67.07 | 0.384 | 12.2 | 1.72 | 0.272 | -- | -- | -- | 0.316 | 17 | -- | -- | -- | -- |
| 60.7 | 0.363 | 12.2 | 1.74 | -- | -0.835 | -- | -- | 0.306 | -- | 78 | 1305 | -- | -- |
| 81.27 | 0.42 | 12.3 | -- | 0.257 | -1.64 | -- | -- | 0.0973 | 18.5 | 66 | 47520 | -- | -- |
| 70.96 | 0.394 | 12.2 | 1.71 | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
| 145.03 | 0.563 | 12.3 | -- | 0.242 | -- | -- | -- | 0.125 | 17.2 | -- | -- | -- | -- |
| 83.27 | 0.425 | 12.3 | -- | -- | -1.6 | -- | -- | 0.0447 | -- | 64.37 | 47520 | -- | -- |
| 148.08 | 0.568 | 12.3 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.50 | humidity | 80.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 2 | 50.50 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 3 | 50.58 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 4 | 50.61 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 9 | 50.68 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 13 | 50.78 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 8 | NA |
| 23 | 50.92 | humidity | 80.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 29 | 50.98 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 12 |
| 30 | 50.98 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 19 |
| 38 | 51.06 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 45 | 51.10 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 58 | 51.21 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 64 | 51.26 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 69 | 51.30 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 107 | 51.58 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 6 | NA |
| 109 | 51.58 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 22 | 16 |
| 124 | 51.73 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 12 |
| 154 | 51.84 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 14 |
| 179 | 51.95 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 20 |
| 250 | 52.18 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 12 |
| 333 | 52.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 336 | 52.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 345 | 52.49 | humidity | 90.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 378 | 52.59 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 20 |
| 384 | 52.61 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 20 |
| 446 | 52.77 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 6 |
| 473 | 52.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 474 | 52.83 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 481 | 52.84 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 521 | 52.96 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 547 | 53.01 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 548 | 53.01 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 595 | 53.11 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 598 | 53.12 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 633 | 53.19 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 11 |
| 677 | 53.24 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 702 | 53.28 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 735 | 53.35 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 758 | 53.37 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 759 | 53.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 776 | 53.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 779 | 53.39 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 780 | 53.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 787 | 53.40 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 16 |
| 813 | 53.44 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 12 |
| 833 | 53.47 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 13 |
| 951 | 53.60 | temperature | 20.0 | 720 | > th | dose independent | sin | 16 | NA |
| 955 | 53.61 | temperature | 20.0 | 720 | < th | dose independent | sin | 15 | NA |
| 975 | 53.64 | humidity | 80.0 | 720 | < th | dose independent | sin | 12 | NA |