Os12g0480200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0480200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.61 | 0.742 | 8.75 | -3.1 | 2.54 | 2.64 | 1.64 | -2.32 | -0.202 | 7.11 | 26.6 | 1304 | -- | -- |
| 250.89 | 0.738 | 8.69 | -2.54 | 2.52 | 2.42 | 1.79 | -- | -0.0913 | 7.11 | 26.61 | 1293 | -- | -- |
| 256.7 | 0.746 | 8.75 | -3.07 | 2.53 | 2.64 | -- | -2.31 | -0.205 | 7.08 | 26.6 | 1308 | -- | -- |
| 257.96 | 0.748 | 8.69 | -2.5 | 2.53 | 2.39 | -- | -- | -0.0912 | 7.07 | 26.6 | 1308 | -- | -- |
| 593.13 | 1.13 | 8.81 | -2.91 | -- | 2.58 | -- | -1.37 | -0.23 | -- | 26.01 | 1351 | -- | -- |
| 497.49 | 1.05 | 8.67 | -1.76 | 2.62 | -- | 1.83 | -- | -0.0225 | 6.58 | -- | -- | -- | -- |
| 505.94 | 1.05 | 8.67 | -1.73 | 2.63 | -- | -- | -- | -0.0282 | 6.56 | -- | -- | -- | -- |
| 592.91 | 1.13 | 8.76 | -2.51 | -- | 2.45 | -- | -- | -0.112 | -- | 26.2 | 1351 | -- | -- |
| 407.44 | 0.94 | 8.58 | -- | 2.59 | 1.93 | -- | -- | 0.411 | 7.02 | 28.6 | 1254 | -- | -- |
| 864.89 | 1.37 | 8.73 | -1.67 | -- | -- | -- | -- | 0.0256 | -- | -- | -- | -- | -- |
| 584.96 | 1.13 | 8.63 | -- | 2.6 | -- | -- | -- | 0.165 | 6.6 | -- | -- | -- | -- |
| 745.19 | 1.27 | 8.66 | -- | -- | 1.96 | -- | -- | 0.344 | -- | 27.54 | 1324 | -- | -- |
| 938.23 | 1.43 | 8.68 | -- | -- | -- | -- | -- | 0.211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 25 | 256.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 30 | 256.36 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 36 | 256.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 54 | 257.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 163 | 259.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 202 | 259.65 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 236 | 260.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 254 | 261.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 345 | 270.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 351 | 270.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 362 | 270.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 366 | 270.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 377 | 271.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 419 | 271.64 | temperature | 30 | 1440 | < th | dose independent | sin | 19 | NA |
| 430 | 271.86 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 439 | 271.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 468 | 271.99 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 542 | 272.09 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 576 | 272.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 786 | 273.03 | temperature | 30 | 1440 | > th | dose independent | sin | 17 | NA |
| 823 | 273.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 827 | 273.68 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 869 | 274.11 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 978 | 274.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 17 |