Os12g0477600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0477600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.64 | 0.296 | 11.3 | 0.411 | 0.436 | -0.606 | -0.406 | 0.167 | 0.298 | 21.6 | 19.7 | 4214 | -- | -- |
| 39.63 | 0.293 | 11.3 | 0.428 | 0.433 | -0.665 | -0.407 | -- | 0.305 | 21.5 | 19.53 | 4090 | -- | -- |
| 40.15 | 0.295 | 11.3 | 0.43 | 0.431 | -0.635 | -- | 0.16 | 0.301 | 21.7 | 19.53 | 3990 | -- | -- |
| 40.05 | 0.295 | 11.3 | 0.462 | 0.43 | -0.658 | -- | -- | 0.309 | 21.8 | 19.5 | 3273 | -- | -- |
| 50.67 | 0.332 | 11.3 | 0.44 | -- | -0.624 | -- | 0.227 | 0.307 | -- | 19.53 | 3619 | -- | -- |
| 46.49 | 0.32 | 11.3 | 0.819 | 0.438 | -- | -0.36 | -- | 0.466 | 21.8 | -- | -- | -- | -- |
| 46.98 | 0.321 | 11.3 | 0.832 | 0.439 | -- | -- | -- | 0.466 | 21.9 | -- | -- | -- | -- |
| 50.64 | 0.331 | 11.3 | 0.461 | -- | -0.694 | -- | -- | 0.309 | -- | 19.6 | 3619 | -- | -- |
| 40.9 | 0.298 | 11.3 | -- | 0.446 | -0.812 | -- | -- | 0.2 | 21.6 | 18.2 | 28844 | -- | -- |
| 58.5 | 0.357 | 11.3 | 0.837 | -- | -- | -- | -- | 0.466 | -- | -- | -- | -- | -- |
| 65.24 | 0.378 | 11.3 | -- | 0.441 | -- | -- | -- | 0.373 | 22 | -- | -- | -- | -- |
| 51.87 | 0.335 | 11.3 | -- | -- | -0.85 | -- | -- | 0.202 | -- | 18 | 29597 | -- | -- |
| 76.99 | 0.41 | 11.3 | -- | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.19 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 2 | 38.20 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 4 | 38.21 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 9 | 38.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 11 | 38.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 13 | 38.48 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 17 | 38.59 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 18 | 38.64 | radiation | 30 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 19 | 38.64 | radiation | 40 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 21 | 38.65 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 26 | 38.70 | radiation | 10 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 29 | 38.71 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 30 | 38.71 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 34 | 38.72 | humidity | 50 | 43200 | < th | dose dependent | sin | 10 | NA |
| 44 | 38.73 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 15 |
| 45 | 38.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 49 | 38.74 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 54 | 38.75 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 61 | 38.76 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 82 | 38.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 84 | 38.79 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 86 | 38.79 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 129 | 38.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 131 | 38.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 136 | 38.86 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 149 | 38.88 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 156 | 38.89 | humidity | 70 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 163 | 38.90 | humidity | 70 | 43200 | < th | dose independent | rect. | 11 | 9 |
| 181 | 38.92 | humidity | 60 | 43200 | < th | dose dependent | sin | 5 | NA |
| 184 | 38.92 | radiation | 30 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 217 | 38.95 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 264 | 38.97 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 316 | 39.00 | humidity | 70 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 336 | 39.00 | radiation | 20 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 370 | 39.01 | humidity | 70 | 43200 | > th | dose independent | rect. | 10 | 10 |
| 540 | 39.04 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 551 | 39.05 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 570 | 39.05 | radiation | 30 | 43200 | < th | dose dependent | sin | 4 | NA |
| 644 | 39.07 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 765 | 39.10 | humidity | 70 | 43200 | < th | dose independent | sin | 21 | NA |
| 767 | 39.10 | radiation | 20 | 43200 | < th | dose independent | sin | 4 | NA |
| 874 | 39.11 | humidity | 50 | 43200 | > th | dose independent | sin | 10 | NA |
| 927 | 39.12 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 948 | 39.12 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 951 | 39.12 | radiation | 10 | 43200 | > th | dose dependent | sin | 3 | NA |
| 993 | 39.13 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 994 | 39.13 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 4 |