Os12g0477100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0477100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 481.96 | 1.03 | 3.43 | 0.591 | 0.232 | -0.822 | 0.831 | 0.513 | 0.0486 | 2.51 | 1012 | 3909 | -- | -- |
| 482.87 | 1.02 | 3.44 | 0.495 | 0.256 | -0.821 | 0.916 | -- | 0.0359 | 2.43 | 1012 | 3948 | -- | -- |
| 484.34 | 1.03 | 3.43 | 0.584 | 0.233 | -0.82 | -- | 0.574 | 0.0465 | 1.96 | 1012 | 3875 | -- | -- |
| 485.33 | 1.03 | 3.44 | 0.446 | 0.23 | -0.843 | -- | -- | 0.0182 | 2.01 | 1012 | 3908 | -- | -- |
| 487.63 | 1.03 | 3.43 | 0.59 | -- | -0.804 | -- | 0.576 | 0.0479 | -- | 1012 | 3883 | -- | -- |
| 504.47 | 1.05 | 3.48 | 0.214 | 0.196 | -- | 0.923 | -- | -0.156 | 2.64 | -- | -- | -- | -- |
| 507.25 | 1.05 | 3.49 | 0.191 | 0.203 | -- | -- | -- | -0.161 | 1.44 | -- | -- | -- | -- |
| 488.59 | 1.03 | 3.44 | 0.451 | -- | -0.825 | -- | -- | 0.0182 | -- | 1012 | 3909 | -- | -- |
| 490.2 | 1.03 | 3.46 | -- | 0.247 | -0.73 | -- | -- | -0.0456 | 2.19 | 1012 | 3842 | -- | -- |
| 509.78 | 1.06 | 3.48 | 0.199 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 508.21 | 1.05 | 3.49 | -- | 0.206 | -- | -- | -- | -0.182 | 1.48 | -- | -- | -- | -- |
| 493.52 | 1.03 | 3.46 | -- | -- | -0.717 | -- | -- | -0.0503 | -- | 1012 | 3908 | -- | -- |
| 510.82 | 1.05 | 3.49 | -- | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 475.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 2 | 476.85 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 3 | 477.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 4 | 477.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 10 |
| 14 | 478.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 7 |
| 19 | 478.94 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 22 | 479.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 16 |
| 30 | 479.59 | wind | 3 | 720 | > th | dose independent | rect. | 14 | 1 |
| 31 | 479.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 15 |
| 33 | 479.85 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 38 | 479.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 1 |
| 54 | 480.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 87 | 480.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 93 | 480.86 | humidity | 60 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 101 | 480.97 | wind | 3 | 720 | > th | dose independent | rect. | 13 | 3 |
| 116 | 481.15 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 121 | 481.20 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 165 | 481.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 172 | 481.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 18 | 11 |
| 186 | 481.74 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 201 | 481.87 | humidity | 80 | 270 | > th | dose dependent | rect. | 17 | 3 |
| 211 | 481.92 | atmosphere | 1010 | 4320 | > th | dose dependent | sin | 13 | NA |
| 214 | 481.93 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 6 |
| 231 | 482.04 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 236 | 482.06 | temperature | 30 | 270 | < th | dose dependent | sin | 16 | NA |
| 238 | 482.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 18 | 13 |
| 249 | 482.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 268 | 482.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 272 | 482.24 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 8 | 12 |
| 285 | 482.28 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 291 | 482.30 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 9 | 9 |
| 297 | 482.31 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 328 | 482.41 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 330 | 482.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 332 | 482.42 | radiation | 1 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 355 | 482.51 | radiation | 1 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 390 | 482.62 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 397 | 482.63 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 422 | 482.69 | humidity | 50 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 479 | 482.81 | humidity | 50 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 565 | 482.93 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 20 | 22 |
| 584 | 482.97 | atmosphere | 1010 | 4320 | > th | dose dependent | no | NA | NA |
| 607 | 483.02 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 627 | 483.07 | wind | 1 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 635 | 483.09 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 6 |
| 670 | 483.18 | humidity | 50 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 712 | 483.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 714 | 483.33 | temperature | 20 | 90 | < th | dose independent | rect. | 14 | 9 |
| 719 | 483.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 771 | 483.45 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 10 |
| 776 | 483.47 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 825 | 483.57 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 9 |
| 829 | 483.58 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 831 | 483.58 | atmosphere | 1005 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 912 | 483.72 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 991 | 483.84 | temperature | 10 | 270 | > th | dose dependent | sin | 15 | NA |