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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0471100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ATPase 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0321) R2 : 0.016
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.184 (0.0675) R2dN8 : 0.0206 R2N8 : 0.016
σ : 0.604
deviance : 167.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.08 0.577 3.58 -0.141 0.38 11.1 0.0271 -37 0.208 11.9 0.3558 71 -- --
152.1 0.574 3.54 0.0446 0.353 2.38 0.0123 -- 0.179 12.2 1.748 59 -- --
150.91 0.572 3.58 -0.156 0.38 11.8 -- -40.2 0.202 11.7 0.4739 73 -- --
151.45 0.573 3.52 0.0568 0.384 2.39 -- -- 0.203 11.7 1.5 123 -- --
160.04 0.589 3.6 -0.171 -- 12.3 -- -42.2 0.197 -- 0.4442 70 -- --
158.17 0.59 3.53 0.0848 0.377 -- 0.0425 -- 0.197 12.1 -- -- -- --
158.17 0.589 3.53 0.0863 0.377 -- -- -- 0.197 12 -- -- -- --
160.7 0.59 3.53 0.0478 -- 2.33 -- -- 0.198 -- 1.5 129 -- --
151.54 0.573 3.53 -- 0.383 2.4 -- -- 0.197 11.7 1.5 124 -- --
167.13 0.604 3.53 0.0745 -- -- -- -- 0.192 -- -- -- -- --
158.37 0.589 3.53 -- 0.376 -- -- -- 0.188 12 -- -- -- --
160.76 0.591 3.53 -- -- 2.34 -- -- 0.193 -- 1.5 130 -- --
167.28 0.604 3.54 -- -- -- -- -- 0.184 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.30 temperature 25.0 10 < th dose dependent rect. 12 7
9 145.21 radiation 40.0 90 < th dose independent rect. 18 18
10 145.22 wind 1.0 90 > th dose dependent rect. 12 6
11 145.51 temperature 10.0 1440 > th dose independent rect. 13 6
15 145.51 temperature 10.0 1440 > th dose independent rect. 19 18
18 145.51 atmosphere 995.0 1440 > th dose independent rect. 19 18
20 145.56 temperature 25.0 10 < th dose independent rect. 16 2
21 145.58 precipitation 0.1 90 > th dose independent rect. 17 1
22 145.60 precipitation 0.1 90 > th dose dependent rect. 3 15
23 145.62 precipitation 0.1 90 > th dose dependent rect. 17 1
27 145.69 precipitation 0.1 90 > th dose dependent rect. 22 20
35 145.90 temperature 25.0 10 < th dose dependent rect. 16 2
41 146.03 precipitation 0.1 30 > th dose independent rect. 13 5
53 146.03 precipitation 0.1 30 > th dose dependent rect. 13 5
65 146.04 atmosphere 1010.0 90 < th dose dependent rect. 15 3
67 146.10 precipitation 0.1 10 > th dose independent rect. 17 1
95 146.10 precipitation 0.1 10 > th dose dependent rect. 17 1
136 146.31 atmosphere 1010.0 270 < th dose dependent rect. 14 1
138 146.34 temperature 25.0 10 < th dose independent rect. 13 6
147 146.40 wind 3.0 90 > th dose independent rect. 12 6
149 146.43 radiation 40.0 270 > th dose dependent rect. 14 19
151 146.46 temperature 30.0 30 < th dose independent rect. 18 18
155 146.48 radiation 40.0 270 > th dose dependent rect. 14 1
173 146.50 precipitation 0.1 90 > th dose independent rect. 3 15
180 146.62 temperature 30.0 10 < th dose independent rect. 18 23
189 146.77 precipitation 0.1 30 < th dose independent rect. 18 18
190 146.77 precipitation 0.1 30 < th dose dependent rect. 18 18
191 146.79 precipitation 0.1 90 > th dose independent rect. 23 19
196 146.84 radiation 40.0 90 < th dose independent rect. 18 21
204 146.96 atmosphere 1010.0 10 < th dose dependent rect. 14 5
205 146.97 atmosphere 1000.0 90 < th dose dependent rect. 16 1
209 147.03 atmosphere 1000.0 90 < th dose independent rect. 16 2
210 147.04 temperature 20.0 30 > th dose independent rect. 12 6
217 147.08 wind 9.0 30 < th dose independent rect. 18 18
234 147.17 atmosphere 995.0 30 > th dose independent rect. 18 18
237 147.21 temperature 10.0 30 > th dose independent rect. 12 6
239 147.21 atmosphere 1015.0 30 < th dose independent rect. 12 6
240 147.21 temperature 10.0 30 > th dose independent rect. 18 18
242 147.21 radiation 40.0 270 > th dose independent rect. 14 19
249 147.27 humidity 60.0 30 > th dose independent rect. 18 7
252 147.31 wind 9.0 30 < th dose independent rect. 12 6
254 147.31 temperature 25.0 10 < th dose dependent rect. 10 9
260 147.38 radiation 1.0 30 < th dose dependent rect. 18 7
261 147.45 temperature 30.0 10 < th dose independent rect. 11 14
272 147.64 radiation 1.0 30 < th dose independent rect. 18 7
287 147.73 radiation 40.0 14400 < th dose dependent rect. 19 7
296 147.84 wind 1.0 90 > th dose dependent rect. 14 4
300 147.88 temperature 10.0 1440 > th dose independent rect. 19 7
303 147.88 temperature 30.0 1440 < th dose independent rect. 19 7
308 147.88 humidity 50.0 1440 > th dose independent rect. 19 7
310 147.88 atmosphere 995.0 1440 > th dose independent rect. 19 7
311 147.88 radiation 1.0 1440 < th dose independent rect. 19 7
331 147.88 temperature 10.0 1440 > th dose independent rect. 2 17
335 147.89 radiation 20.0 1440 < th dose dependent rect. 19 7
356 148.01 wind 7.0 90 < th dose independent rect. 18 7
361 148.04 precipitation 0.1 10 > th dose independent rect. 4 14
376 148.12 wind 9.0 30 < th dose dependent rect. 18 18
380 148.15 precipitation 0.1 30 < th dose independent rect. 12 6
381 148.15 precipitation 0.1 30 < th dose dependent rect. 12 6
383 148.17 radiation 40.0 90 < th dose independent rect. 12 6
388 148.20 radiation 1.0 90 < th dose dependent rect. 17 1
391 148.22 precipitation 0.1 10 < th dose independent sin 22 NA
392 148.22 precipitation 0.1 10 < th dose dependent sin 22 NA
393 148.23 wind 3.0 90 > th dose independent rect. 14 4
394 148.23 temperature 30.0 30 < th dose independent rect. 18 7
408 148.30 atmosphere 995.0 10 > th dose independent rect. 18 23
409 148.31 radiation 40.0 270 > th dose independent rect. 14 1
421 148.35 radiation 1.0 90 < th dose independent rect. 17 1
461 148.47 atmosphere 1000.0 270 < th dose independent rect. 14 1
468 148.48 atmosphere 995.0 90 > th dose independent rect. 18 23
474 148.51 humidity 90.0 720 < th dose independent rect. 6 2
484 148.52 radiation 40.0 90 < th dose dependent rect. 12 6
497 148.59 wind 5.0 90 > th dose independent rect. 17 1
511 148.63 atmosphere 995.0 90 > th dose independent rect. 18 7
513 148.63 humidity 50.0 30 > th dose dependent rect. 12 6
515 148.64 temperature 10.0 90 > th dose independent rect. 18 7
521 148.64 radiation 10.0 1440 < th dose independent rect. 19 10
522 148.64 temperature 10.0 90 > th dose independent rect. 1 17
523 148.64 atmosphere 1015.0 90 < th dose independent rect. 1 17
526 148.65 radiation 30.0 90 < th dose dependent rect. 18 7
532 148.67 temperature 25.0 10 < th dose dependent rect. 8 11
548 148.74 humidity 80.0 90 > th dose dependent rect. 17 1
558 148.78 atmosphere 1015.0 30 < th dose independent rect. 18 18
563 148.82 humidity 50.0 30 > th dose independent rect. 12 6
572 148.87 wind 9.0 90 < th dose independent rect. 1 17
573 148.89 humidity 50.0 14400 > th dose independent rect. 18 1
585 148.93 humidity 60.0 30 > th dose independent rect. 18 18
591 148.94 radiation 10.0 1440 < th dose dependent rect. 19 10
596 148.95 temperature 10.0 90 > th dose dependent rect. 18 7
602 148.97 radiation 20.0 10 < th dose independent rect. 8 11
608 149.02 precipitation 0.1 90 > th dose dependent sin 2 NA
614 149.06 wind 3.0 90 > th dose independent rect. 3 15
620 149.08 radiation 10.0 90 < th dose dependent rect. 10 8
634 149.10 humidity 50.0 30 > th dose dependent rect. 17 1
638 149.11 wind 1.0 30 > th dose independent rect. 18 7
664 149.19 wind 3.0 90 > th dose independent rect. 9 9
666 149.20 precipitation 0.1 90 < th dose independent sin 2 NA
667 149.20 precipitation 0.1 90 < th dose dependent sin 2 NA
669 149.22 radiation 20.0 10 > th dose independent rect. 11 1
670 149.22 precipitation 0.1 90 < th dose independent rect. 18 7
672 149.22 radiation 1.0 90 < th dose dependent rect. 13 5
675 149.22 precipitation 0.1 90 < th dose dependent rect. 18 7
684 149.25 radiation 30.0 14400 < th dose independent rect. 17 2
698 149.28 precipitation 0.1 10 < th dose independent rect. 18 23
700 149.28 precipitation 0.1 10 < th dose dependent rect. 18 23
702 149.29 atmosphere 995.0 270 > th dose independent rect. 15 22
732 149.36 wind 1.0 90 > th dose dependent rect. 12 11
738 149.40 wind 9.0 90 < th dose dependent rect. 18 7
744 149.43 temperature 10.0 1440 > th dose independent rect. 15 4
750 149.43 temperature 10.0 1440 > th dose independent rect. 19 20
753 149.43 atmosphere 995.0 30 > th dose independent rect. 13 23
766 149.45 precipitation 0.1 10 > th dose dependent sin 22 NA
792 149.49 temperature 30.0 10 < th dose independent sin 19 NA
823 149.56 wind 1.0 90 > th dose dependent rect. 1 17
830 149.58 wind 1.0 270 > th dose independent rect. 13 2
833 149.59 precipitation 0.1 90 < th dose independent rect. 18 21
834 149.59 precipitation 0.1 90 < th dose dependent rect. 18 21
836 149.60 atmosphere 1015.0 1440 < th dose independent rect. 15 4
838 149.60 wind 5.0 90 < th dose independent rect. 18 21
841 149.61 wind 3.0 90 > th dose independent rect. 7 11
845 149.62 atmosphere 1015.0 4320 < th dose independent rect. 18 1
850 149.62 radiation 1.0 30 < th dose dependent rect. 18 22
853 149.63 radiation 1.0 90 < th dose independent rect. 10 8
866 149.66 radiation 40.0 90 < th dose dependent rect. 18 18
881 149.69 precipitation 0.1 10 > th dose independent sin 22 NA
900 149.72 wind 1.0 90 > th dose dependent rect. 3 15
909 149.74 radiation 1.0 30 < th dose dependent rect. 18 18
912 149.75 radiation 1.0 90 < th dose independent rect. 13 5
920 149.76 humidity 50.0 14400 > th dose independent rect. 19 10
924 149.77 humidity 50.0 90 > th dose independent rect. 1 17
938 149.81 temperature 10.0 90 > th dose dependent rect. 1 17
939 149.82 humidity 90.0 90 > th dose independent rect. 17 1
947 149.83 radiation 1.0 30 < th dose independent rect. 18 22
955 149.84 humidity 50.0 270 > th dose independent rect. 13 2
963 149.85 wind 9.0 270 < th dose independent rect. 15 23
964 149.85 wind 3.0 90 > th dose dependent rect. 17 1
970 149.87 radiation 40.0 90 < th dose independent rect. 15 3
983 149.89 atmosphere 1015.0 90 < th dose independent rect. 18 7
985 149.90 precipitation 0.1 10 < th dose independent rect. 19 10
989 149.90 precipitation 0.1 10 < th dose dependent rect. 19 10
990 149.90 radiation 1.0 30 < th dose dependent rect. 18 14
994 149.91 wind 9.0 90 < th dose independent rect. 15 3
1000 149.92 radiation 1.0 30 < th dose independent rect. 18 18