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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0470700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AAA ATPase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.81 (0.0258) R2 : 0.0148
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.142 (0.0543) R2dN8 : 0.0191 R2N8 : 0.0148
σ : 0.486
deviance : 108.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.27 0.464 2.81 -0.028 0.0644 0.872 -0.388 3.09 0.144 1.98 1015 10 -- --
104.25 0.479 2.81 0.018 0.0732 0.93 -0.0993 -- 0.154 0.49 1015 10 -- --
99.71 0.469 2.81 -0.0134 0.0767 0.863 -- 2.9 0.148 23.5 1015 2 -- --
104.27 0.479 2.81 0.0223 0.0761 0.927 -- -- 0.154 23.4 1015 10 -- --
100.08 0.468 2.81 -0.0113 -- 0.903 -- 2.9 0.149 -- 1015 3 -- --
107.59 0.486 2.81 0.0184 0.106 -- -0.0577 -- 0.143 23.9 -- -- -- --
107.6 0.486 2.81 0.021 0.107 -- -- -- 0.144 23.5 -- -- -- --
104.62 0.478 2.81 0.0243 -- 0.967 -- -- 0.156 -- 1015 16 -- --
104.28 0.478 2.81 -- 0.0763 0.927 -- -- 0.152 23.4 1015 16 -- --
108.32 0.486 2.81 0.0239 -- -- -- -- 0.145 -- -- -- -- --
107.62 0.485 2.81 -- 0.107 -- -- -- 0.141 23.6 -- -- -- --
103.14 0.473 2.82 -- -- 1.42 -- -- 0.123 -- 1016 19 -- --
108.33 0.486 2.81 -- -- -- -- -- 0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.31 atmosphere 1015.0 30 < th dose independent rect. 23 23
3 93.38 humidity 60.0 1440 > th dose independent rect. 1 8
5 93.93 humidity 60.0 1440 > th dose independent rect. 4 5
7 94.29 humidity 60.0 1440 > th dose independent rect. 7 2
10 94.54 humidity 60.0 1440 < th dose independent rect. 8 1
24 94.64 humidity 60.0 1440 > th dose independent rect. 20 13
26 94.82 humidity 60.0 1440 < th dose dependent rect. 8 1
39 94.83 humidity 60.0 1440 > th dose independent rect. 22 11
56 95.96 wind 1.0 10 < th dose dependent rect. 9 6
102 96.37 wind 1.0 10 < th dose independent rect. 9 6
141 96.63 atmosphere 1005.0 90 > th dose dependent rect. 22 1
144 97.13 humidity 60.0 30 < th dose independent rect. 18 16
146 97.15 humidity 60.0 30 < th dose dependent rect. 18 16
171 97.35 humidity 60.0 270 < th dose independent rect. 8 1
173 97.35 humidity 60.0 30 < th dose independent rect. 9 1
231 97.35 humidity 60.0 270 < th dose dependent rect. 8 1
233 97.35 humidity 60.0 10 < th dose dependent rect. 9 1
392 97.36 wind 1.0 10 < th dose dependent rect. 9 1
408 97.45 wind 1.0 10 < th dose independent rect. 9 1
414 97.49 humidity 90.0 90 > th dose independent rect. 9 1
415 97.49 humidity 90.0 90 > th dose dependent rect. 9 1
482 97.85 temperature 15.0 1440 > th dose independent rect. 23 1
485 97.93 radiation 40.0 30 > th dose dependent rect. 9 2
549 98.12 wind 1.0 10 < th dose independent sin 20 NA
572 98.20 temperature 15.0 30 > th dose independent rect. 23 23
629 98.38 atmosphere 1015.0 1440 > th dose independent rect. 24 1
631 98.41 atmosphere 1015.0 720 < th dose independent rect. 23 16
690 98.71 wind 1.0 10 < th dose dependent sin 21 NA
760 98.84 radiation 40.0 14400 < th dose dependent rect. 23 1
761 98.84 atmosphere 1005.0 10 > th dose dependent rect. 22 2
798 98.94 atmosphere 1015.0 270 < th dose independent rect. 20 23
801 98.95 temperature 25.0 30 > th dose independent rect. 22 1
803 98.96 wind 9.0 1440 < th dose independent rect. 23 1
808 98.96 temperature 30.0 1440 < th dose independent rect. 23 1
812 98.96 humidity 50.0 1440 > th dose independent rect. 23 1
822 98.96 atmosphere 995.0 1440 > th dose independent rect. 23 1
823 98.96 radiation 1.0 1440 < th dose independent rect. 23 1
843 98.96 temperature 10.0 1440 > th dose independent rect. 24 23
846 98.96 radiation 1.0 1440 < th dose dependent rect. 23 1
872 99.00 temperature 20.0 30 > th dose dependent rect. 22 1
893 99.03 atmosphere 1005.0 30 > th dose independent rect. 22 1
910 99.06 wind 3.0 30 < th dose independent rect. 22 1
912 99.06 radiation 40.0 10 > th dose independent rect. 9 2
946 99.07 humidity 80.0 30 > th dose independent rect. 22 1
953 99.09 precipitation 0.1 30 < th dose independent rect. 22 1
954 99.09 wind 5.0 30 < th dose dependent rect. 22 1
956 99.09 precipitation 0.1 30 < th dose dependent rect. 22 1
958 99.10 humidity 90.0 30 < th dose independent rect. 22 1
961 99.10 atmosphere 1015.0 720 < th dose independent rect. 19 16
964 99.11 atmosphere 1015.0 10 < th dose independent sin 10 NA
968 99.11 atmosphere 1015.0 10 < th dose independent sin 22 NA
974 99.12 radiation 40.0 10 > th dose dependent sin 11 NA
981 99.13 temperature 10.0 30 > th dose independent rect. 22 1
983 99.13 temperature 30.0 30 < th dose independent rect. 22 1
984 99.13 humidity 50.0 30 > th dose independent rect. 22 1
988 99.13 atmosphere 1010.0 30 < th dose independent rect. 22 1
990 99.13 radiation 1.0 30 < th dose independent rect. 22 1
997 99.13 radiation 1.0 30 < th dose dependent rect. 22 1