Os12g0468500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclic nucleotide-gated channel C (Fragment).
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Os12g0468500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclic nucleotide-gated channel C (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.9 | 0.412 | 8.69 | -0.422 | 0.405 | -1.13 | -0.462 | 0.648 | -0.889 | 8.53 | 6.732 | 7238 | -- | -- |
| 77.42 | 0.41 | 8.73 | -0.566 | 0.408 | -1.1 | -0.443 | -- | -0.96 | 8.41 | 13.66 | 7271 | -- | -- |
| 77.53 | 0.41 | 8.69 | -0.439 | 0.41 | -1.13 | -- | 0.64 | -0.891 | 8.22 | 7.097 | 7208 | -- | -- |
| 77.87 | 0.411 | 8.72 | -0.582 | 0.409 | -1.18 | -- | -- | -0.926 | 8.22 | 11.16 | 7239 | -- | -- |
| 85.53 | 0.431 | 8.71 | -0.438 | -- | -1.18 | -- | 0.664 | -0.91 | -- | 7.929 | 6452 | -- | -- |
| 100.83 | 0.471 | 8.79 | -1.16 | 0.402 | -- | -0.445 | -- | -1.24 | 8.84 | -- | -- | -- | -- |
| 101.45 | 0.472 | 8.79 | -1.18 | 0.407 | -- | -- | -- | -1.24 | 8.59 | -- | -- | -- | -- |
| 85.9 | 0.432 | 8.73 | -0.584 | -- | -1.21 | -- | -- | -0.953 | -- | 11.24 | 6439 | -- | -- |
| 81.39 | 0.42 | 8.68 | -- | 0.373 | -1.28 | -- | -- | -0.756 | 8.44 | 6.828 | 23663 | -- | -- |
| 110.78 | 0.492 | 8.8 | -1.18 | -- | -- | -- | -- | -1.24 | -- | -- | -- | -- | -- |
| 138.15 | 0.55 | 8.76 | -- | 0.404 | -- | -- | -- | -1.11 | 8.81 | -- | -- | -- | -- |
| 89.48 | 0.441 | 8.69 | -- | -- | -1.28 | -- | -- | -0.755 | -- | 6.518 | 23746 | -- | -- |
| 147.42 | 0.567 | 8.77 | -- | -- | -- | -- | -- | -1.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.06 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 2 | 69.44 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 5 | 69.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 7 | 70.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 13 | 70.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 15 | 70.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 25 | 71.10 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 40 | 71.62 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 50 | 71.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 52 | 71.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 62 | 71.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 77 | 72.07 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 95 | 72.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 97 | 72.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 99 | 72.30 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 9 |
| 186 | 73.16 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 201 | 73.24 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 317 | 74.04 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 387 | 74.46 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 394 | 74.51 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 395 | 74.52 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 398 | 74.55 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 422 | 74.65 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 435 | 74.70 | wind | 7 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 437 | 74.70 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 443 | 74.72 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 444 | 74.73 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 445 | 74.73 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 446 | 74.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 449 | 74.75 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 453 | 74.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 459 | 74.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 465 | 74.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 482 | 74.83 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 500 | 74.90 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 501 | 74.90 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 515 | 74.96 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 16 |
| 525 | 74.99 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 534 | 75.01 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 550 | 75.05 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 13 |
| 552 | 75.06 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 575 | 75.12 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 582 | 75.14 | wind | 3 | 43200 | > th | dose dependent | sin | 6 | NA |
| 656 | 75.29 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 689 | 75.33 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 717 | 75.39 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 729 | 75.42 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 749 | 75.46 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 750 | 75.46 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 757 | 75.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 769 | 75.50 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 781 | 75.52 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 786 | 75.52 | wind | 9 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 863 | 75.66 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 9 |
| 875 | 75.68 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 923 | 75.76 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 928 | 75.76 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 964 | 75.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |