Os12g0468000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os12g0468000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 308.92 | 0.826 | 9.46 | 2.99 | 1.08 | -3.49 | 2.45 | -0.619 | -0.208 | 11.1 | 21.85 | 290 | 17.8 | 21.4 |
| 308.13 | 0.818 | 9.45 | 3.08 | 0.986 | -3.56 | 2.42 | -- | -0.175 | 11.2 | 22.19 | 321 | 17.6 | 21.2 |
| 330.9 | 0.847 | 9.45 | 3.27 | 0.999 | -3.52 | -- | 0.787 | -0.155 | 11 | 22.16 | 327 | 17.9 | 21.1 |
| 331.02 | 0.847 | 9.45 | 3.19 | 0.98 | -3.48 | -- | -- | -0.195 | 10.7 | 22.18 | 334 | 17.7 | 21 |
| 360.2 | 0.884 | 9.46 | 3.7 | -- | -3.08 | -- | 1.58 | -0.146 | -- | 23.02 | 451 | 16.4 | 20.7 |
| 494.95 | 1.04 | 9.58 | 2.46 | 1.05 | -- | 2.03 | -- | -0.793 | 8.18 | -- | -- | -- | -- |
| 505.99 | 1.05 | 9.58 | 2.52 | 1.08 | -- | -- | -- | -0.798 | 7.59 | -- | -- | -- | -- |
| 358.46 | 0.882 | 9.49 | 3.21 | -- | -2.89 | -- | -- | -0.201 | -- | 23.15 | 457 | 16.4 | 20.6 |
| 579.29 | 1.12 | 9.5 | -- | 1.07 | -2.71 | -- | -- | -0.646 | 9.5 | 22.91 | 332 | 18.5 | 20 |
| 568.39 | 1.11 | 9.61 | 2.53 | -- | -- | -- | -- | -0.782 | -- | -- | -- | -- | -- |
| 672.8 | 1.21 | 9.65 | -- | 1.1 | -- | -- | -- | -1.08 | 7.44 | -- | -- | -- | -- |
| 608.26 | 1.15 | 9.63 | -- | -- | -2.21 | -- | -- | -0.723 | -- | 24.03 | 450 | 16.5 | 20.6 |
| 737.37 | 1.27 | 9.67 | -- | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 318.77 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 2 | 320.85 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 6 | 324.12 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 15 | 329.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 82 | 341.73 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 87 | 342.25 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 96 | 343.13 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 102 | 343.42 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 112 | 344.06 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 116 | 344.23 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 121 | 344.57 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 129 | 345.19 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 136 | 345.64 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 149 | 346.36 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 150 | 346.38 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 166 | 347.24 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 194 | 349.16 | temperature | 20.0 | 10 | > th | dose dependent | sin | 20 | NA |
| 197 | 349.20 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 202 | 349.32 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 11 |
| 217 | 349.65 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 228 | 349.81 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 243 | 349.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 258 | 350.10 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 260 | 350.14 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 8 |
| 275 | 350.29 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 8 |
| 281 | 350.34 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 283 | 350.36 | radiation | 1.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 290 | 350.46 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 13 |
| 413 | 351.22 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 431 | 351.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 436 | 351.39 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 9 |
| 477 | 351.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 505 | 351.90 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 507 | 351.92 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 534 | 352.02 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 535 | 352.02 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 539 | 352.05 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 547 | 352.13 | radiation | 1.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 561 | 352.21 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 694 | 353.13 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 10 | 14 |
| 760 | 353.76 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 851 | 354.53 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 853 | 354.54 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 1 | 17 |
| 927 | 354.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 948 | 354.95 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 953 | 355.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 954 | 355.00 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 955 | 355.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 956 | 355.02 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 16 | NA |